Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu05g0657 ATGAGAGAAACCACGAATGCCTCACGAGAGGATGAGAGAACGAAAAAGGAAATTGGCGGCGGAGGAGTGTCGGCAAGCGGCGGTGAGGCAGACTATAAGAGAACAAATAAAAGGAGTGGGTCGACGCGCTTTGACGGGGACCAGCCATTTGAAAATCGATTGCTGAAGCTCATGGCCCCGTCAAGAAAGTCCAGAAGTGTCAATAAGCGGTTTTCTACTGCTAACGAGGCCTCCTCAAGCAAGTACGTGGAAGATGCTAGCAAAAGCAAGCAAAAGAAGAGGAAATTTGCTGACCTGTTAGGGCCGCAATGGAGTAAGGACGAGGTTGAGCAGTTCTATGAAGCATATCGTAAATATGGAAAAGATTGGAAGAAGGTAGCCGCTGCAGTAAGGAACCGTTCTACAGAAATGGTTGAGGCTCTTTTCACCATGAATAGGGCCTATTTATCACTTCCAGAGGGCACTGCTTCAGTTGTTGGGTTAATTGCAATGATGACTGATCACTACAGCGTACTGAGAGACAGTGAAAGTGAACAAGAAAGCAACGAAGATTCTGGAGCAATAAGAAAGCCTCAAAAGCGACTGCGTGGAAAGTCACGAAGTAACAACTCTAAAGGATTGGATGCACATTTTGGAGATGCTTCACAATCACAGTCACTTCCAACAAATTATGGCTGCCTGTCATTGTTGAAGAAGAGGCGTTCTGGAATTAAACCTCATGCTGTTGGAAAACGGACACCACGTGTTCCTGTATCATATTCATATGATAAAGATAGCAGAGAGAAGCTTTTTTCACCCTCCCGACATAATAGCAAGGTGAAGGTTGATGATCCAAATGATGATGATGTTGCTCATGAGATAGCTTTAGTTTTAACAGAGGCTTCACAACGAGATGGTTCTCCTCAACTTTCACAAACACCAAATCCAAAAATAGAAGGTCATGTACTTTCACCTATCCGAAATGACAGGATGCGAAGTGAATCAGACATGATGAGCATGAAGTTTCGTTGTAGTGAAATGGATGAAGGTGGTTGTGAATTAAGCTTAGGAAGCACTGGAGCTGATAACGCAGACTATGACCTGGGGAAAAATACTCGTGAGATTCAAAGAAAGGGTAAAAGGTACTATGGAAAGAAGCCAGAAGTTGAAGAAAGTATGTACAACCACTTGGATGACATTAAGGAAGCTTGCAGTGGGACGGAAGAGGGACAAAAATCAGGCAGTTTGAGGGGAAAACTTGAAACTGAGGATTTAGATGTAAAATCTGTGAGATCCTCTTTTAAGGGCCCGAGGAAAAGAAGTAAGAAAGCTCTTTTCGGAGATGAATCTTCAGCATTTGATGCACTGCAAACTTTAGCTGATTTGTCTCTAATGATGCCAGACACAAATGCTGAGAGTGAGCCTTCTGCTAAGGTTAAAGAAGAAAATCCTGATGTCACGGACAAGTCTAAAATGAAAGGGAGCCATCCAGTTGCTGGAGCTGAAATCTCTGCTCTCAAAACATCTAAGACGGGAAAAGCTTTTGGCAACAATGTCGGTCCTATTCCTGAAGCAGAGGGAATTCAAGGATCCAATAATGGAAATCGAAAAAGGAAACTGAAGTCTTCTCCATTTAAAATATCATCTAAAGATGAAGATAACAATGATTCTCGTGTCAATGACAATCTGAAAATCAAGGCTGCAGATGAAGCAAAGAGTTCCGTTGGTAAAGTTAAACGTTCCCCTCATAATGCTGGACCTGCAAAGTCTGGCAAAATATCAAAACCTCTAGATCATCACTCATCTTCAAGTACTGACCATAAAAGAGAAGATGGTGACTATGCTTTATCCACAACACAAGTTCTAACAAATAATCCAACCAGCTTACCTACCAAACTTAGGAGCAGGCGGAAGATGAACCTGGGGAAGCCACAGAGAGATTCAAAGCTTGCTGATAATACTTCGATCGATCAACTCAATATAACTGCTCAATCAATAGATGATAGACCACATGATCTCAAGGAGCGGCATTCTAATTGCCTATCTTGGCATAAACTGCGCAGATGGTGTGTTTTTGAGTGGTTCTATAGTGCAATCGATTTTCCATGGTTTGCAAAATGTGAGTTCGTAGAGTACTTAAATCACGTTGGATTAGGTCATATTCCTAGATTGACACGTGTTGAGTGGGGTGTTATTCGAAGTTCCCTTGGGAGACCACGGAGATTCTCAGCTCAATTCTTGAAGGAAGAAAAACAGAAGCTAAATCAATATAGGGAATCTGTTAGGAAACACTATGCTGAACTTCGTGCAGGCACAAGGGAAGGACTTCCAACTGATTTAGCTCGGCCATTATCTGTTGGACAGCGAGTCATTGCCATTCATCCAAAAACAAGAGAGATCCACGATGGAAGTGTACTTACTGTTGACTATAGCAGGTGTCGTGTTCAGTTTGACCGACCTGAACTTGGGGTTGAATTTGTCATGGATATCGAGTGTATGCCTTTAAATCCAGTTGAAAACATGCCTGCAAATTTGTCAAGACATGGTGTGGCTCTTGATAAAATATTTGGGAATCTCAACGATGCTAAGATTAATGGCTTACTGAAGGAAGCGAAGATTGAAGACTATATGAAATCAACCAGCAATGATAAACTTGAAAGCACGGAGGGTTCTGTGTATATTTCCCCTTCCACTCATCACATCAACAAATTAATTAAACAAGCAAAGAAACAAATTGAGGAGAGTGTTCATGAGGAGGGGAAGAGCAGTGTGCCCGTTGAAGCTGAGAACCATGAAATTCCAAAATTAGATTCGGGCAGCAGTAATTTAAGAGACAATGATTTTGTAGAGGAGGAGGTTGAAAATTCTCCAGCAAAAGAAGGGTCAAAGAGGCCCAAAAGAGGTGGGGCTGAGAGGAGTTACCTTACCAGAAGTTCCTATAGTCTTCCTTTGTTTAAATATGTCCACAAGGAAGCAAGAATCTGGATGAGGGGCAGGGGCACTGTCTTCAAGTGGATCACTGCCGCTGGAAATGAAAATCCACAGGCTCTTGGCACTTTGTTTGACCTTCTTGATGGACCAGCCAGCCTCACTTATTTTATATTTGCTAACCACCTATTAAGCACAAAAAGGTTTTCCCTTGAG 3123 42.33 MRETTNASREDERTKKEIGGGGVSASGGEADYKRTNKRSGSTRFDGDQPFENRLLKLMAPSRKSRSVNKRFSTANEASSSKYVEDASKSKQKKRKFADLLGPQWSKDEVEQFYEAYRKYGKDWKKVAAAVRNRSTEMVEALFTMNRAYLSLPEGTASVVGLIAMMTDHYSVLRDSESEQESNEDSGAIRKPQKRLRGKSRSNNSKGLDAHFGDASQSQSLPTNYGCLSLLKKRRSGIKPHAVGKRTPRVPVSYSYDKDSREKLFSPSRHNSKVKVDDPNDDDVAHEIALVLTEASQRDGSPQLSQTPNPKIEGHVLSPIRNDRMRSESDMMSMKFRCSEMDEGGCELSLGSTGADNADYDLGKNTREIQRKGKRYYGKKPEVEESMYNHLDDIKEACSGTEEGQKSGSLRGKLETEDLDVKSVRSSFKGPRKRSKKALFGDESSAFDALQTLADLSLMMPDTNAESEPSAKVKEENPDVTDKSKMKGSHPVAGAEISALKTSKTGKAFGNNVGPIPEAEGIQGSNNGNRKRKLKSSPFKISSKDEDNNDSRVNDNLKIKAADEAKSSVGKVKRSPHNAGPAKSGKISKPLDHHSSSSTDHKREDGDYALSTTQVLTNNPTSLPTKLRSRRKMNLGKPQRDSKLADNTSIDQLNITAQSIDDRPHDLKERHSNCLSWHKLRRWCVFEWFYSAIDFPWFAKCEFVEYLNHVGLGHIPRLTRVEWGVIRSSLGRPRRFSAQFLKEEKQKLNQYRESVRKHYAELRAGTREGLPTDLARPLSVGQRVIAIHPKTREIHDGSVLTVDYSRCRVQFDRPELGVEFVMDIECMPLNPVENMPANLSRHGVALDKIFGNLNDAKINGLLKEAKIEDYMKSTSNDKLESTEGSVYISPSTHHINKLIKQAKKQIEESVHEEGKSSVPVEAENHEIPKLDSGSSNLRDNDFVEEEVENSPAKEGSKRPKRGGAERSYLTRSSYSLPLFKYVHKEARIWMRGRGTVFKWITAAGNENPQALGTLFDLLDGPASLTYFIFANHLLSTKRFSLE 1041
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 5662680 5679835 + CmPI595203_05g006570.1 Cmu05g0657 415571

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmu05g0657 1041 Pfam Myb-like DNA-binding domain 103 138 IPR001005 -
Cmu05g0657 1041 MobiDBLite consensus disorder prediction 586 604 - -
Cmu05g0657 1041 SMART DIRP_2 688 789 IPR033471 -
Cmu05g0657 1041 MobiDBLite consensus disorder prediction 467 485 - -
Cmu05g0657 1041 MobiDBLite consensus disorder prediction 295 314 - -
Cmu05g0657 1041 ProSiteProfiles SANT domain profile. 99 136 IPR017884 -
Cmu05g0657 1041 MobiDBLite consensus disorder prediction 1 79 - -
Cmu05g0657 1041 MobiDBLite consensus disorder prediction 173 191 - -
Cmu05g0657 1041 MobiDBLite consensus disorder prediction 65 79 - -
Cmu05g0657 1041 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 98 138 IPR017930 -
Cmu05g0657 1041 MobiDBLite consensus disorder prediction 537 570 - -
Cmu05g0657 1041 MobiDBLite consensus disorder prediction 905 927 - -
Cmu05g0657 1041 MobiDBLite consensus disorder prediction 937 964 - -
Cmu05g0657 1041 MobiDBLite consensus disorder prediction 260 279 - -
Cmu05g0657 1041 Pfam DIRP 687 788 IPR033471 -
Cmu05g0657 1041 Gene3D - 44 156 - -
Cmu05g0657 1041 MobiDBLite consensus disorder prediction 905 965 - -
Cmu05g0657 1041 MobiDBLite consensus disorder prediction 461 604 - -
Cmu05g0657 1041 MobiDBLite consensus disorder prediction 202 218 - -
Cmu05g0657 1041 SMART sant 100 148 IPR001005 -
Cmu05g0657 1041 Coils Coil 740 760 - -
Cmu05g0657 1041 MobiDBLite consensus disorder prediction 173 218 - -
Cmu05g0657 1041 MobiDBLite consensus disorder prediction 295 311 - -
Cmu05g0657 1041 MobiDBLite consensus disorder prediction 1 18 - -
Cmu05g0657 1041 SUPERFAMILY Homeodomain-like 99 146 IPR009057 -
Cmu05g0657 1041 PANTHER LIN-9 58 910 IPR010561 GO:0000003(PANTHER)|GO:0003677(PANTHER)|GO:0005654(PANTHER)|GO:0006351(InterPro)|GO:0006357(PANTHER)|GO:0017053(InterPro)|GO:0051726(PANTHER)
Cmu05g0657 1041 CDD SANT 104 138 IPR001005 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu05g0657 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu02g1545 Cmu-Chr2:29181349 Cmu05g0657 Cmu-Chr5:5662680 9.00E-113 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g335 . . . . . Bpe14g01136 . . . . Cma06g01485 Cma14g01632 Car06g01277 Car14g01458 . Cpe08g00199 Cpe03g01374 Bhi01g00974 . . . Hepe05g1463 . . . . . . . . . . . Cone7ag0162 Cone4ag0158 Lsi05g01524 . . Cme06g00712 Blo02g00515 . Bda11g00533 Bda13g00178 . Bpe13g00656 . Bma06g01509 . Cmo06g01480 Cmo14g01669 . . . . . . . . . . . . . Cla05g00634 Cam05g0695 Cec05g0708 Cco05g0704 Clacu05g0690 Cmu05g0657 Cre05g0729 . Csa03g01442 Chy06g00683 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003565 1 5 2 1 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 2 1 1 1 1 4 1 2 46
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
6132 PF06584 DIRP 2.10E-30 No_clan Cmu TF