Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu05g0692 ATGTCTGATGATGGAGGGAAGAACAAGAAAGCTGCTCTCATCGGCGTATCTTCCTTGTTTCTTGTTGCCATGGTAGTTGCTGTGGCAGTCGGTGTCAATCGCAAAGACTCCGACATCGCTGGTGGCCGCGGTGCCACGGCGGAGATCTCCACCTCCACCAAAGCCATTAAGGCTCTCTGTCAGCCCACCGATTACCAAGAAACCTGCGAGACAGCTCTGTCCCAAGCCGGGACCAACACAAGCGACCCACGTGAGCTAATCAAAGCCGGATTCCATGTCGCCGTCGACCAAATAAAATGGGCCATCGGAAATTCCTCCACCTTGAAAGATTCCGCCAGTGATCCCATGGCTAAACAAGCTCTTGACGCTTGTGGCGAGCTAATGGATTACGCAATTGACGATCTCTTAATTTCCTTTGACAGAATCACAGACAATTTCGATATCCAGAAAATTGATGATTACATAGAGGATCTTAAGGTTTGGTTGAGTGGCGCATTGACTTATCAAGAAACTTGCTTGGATGGATTCGAAAATGTCACCGGAGATACAGGGGAAAAGATGAAGAATTTGTTGAAAATGTCAAAAGAATTGACAGCTAATGGGCTTGGAATGGTTAGTGAAGTTACTTCCATTATGACCTCTTTTGGGCTTCCATCGGCTGGACGACGGCTGTTGGAGGAATCCGATGAACAAGAGAAAGAGCCGTCGTGGGTTAGTGACAGACGTGGGCTACTTCAAGCCACCGGCGCCACCATCAAGGCGGATGTTGTGGTGGCGAAAGATGGAAGTGGAAAGTACAAAACGGTGAGTGAAGCCTTAAATGATGTCCCAAAGAAGAGCAATAAAACGTTTGTGATTTATGTTAAGGCCGGAGTTTATCAAGAACAAGTAATGATAGAAAAAAGTATGACTTGGGTAATGATGATCGGAGATGGGCCGACTAAAACCAAGATCACCGCCGGCAAGAACTTCATTGACGGAACACCCACCTTCAAAACCGCTACTGTTGCGGTGATTGGAACCAACTTCATCGCGAAGGACATGGGGTTCGAGAACTCTGCCGGACCAGAGAAGCACCAAGCAGTGGCACTCCGAGTTCAATCTGACATGTCAATCTTCTACAATTGTCAAATGGACGGTTACCAAGACACTCTCTACACTCACGCTCACCGTCAATTCTACCGAGACTGCACCATTACCGGCACCATCGATTTCATCTTCGGCAACGGCGCCGTCGTCTTCCAGAACTGCAAGATCCTCGTGAGGAAGCCAATGGAGAATCAACAATGCATCGTCACCGCACAAGGTCGAACTCAACGAAAGGAGCCCACCGCCATAATCTTGCAGAATTGTGTCATCTCCTCTGACCCTGACTTCTTCCCCATCCGCCACATCCACAAAACCTACCTCGGTCGTCCGTGGAAGCAATATTCAAGAACCATCATCATGCAGTCCCAAATTGATGATTTGATCCAACCTGAAGGGTGGCTCCCATGGATGGGCGATTTTGCTCTCAACACTCTGTTTTACACAGAGTACAATAACAGAGGACCTGGCGCCGCAAAGGATAAGCGAGTTAAGTGGAGGGGAATTAAGCAGATCACGCCGGAGCACGCCTTCGATTTCACCGCTGGGAGATTTATTCGCGGTGATCCATGGATCAAGCCCACTGGAGTTCCGTACACTTCCGGCATGATGGCAGTATAA 1707 48.74 MSDDGGKNKKAALIGVSSLFLVAMVVAVAVGVNRKDSDIAGGRGATAEISTSTKAIKALCQPTDYQETCETALSQAGTNTSDPRELIKAGFHVAVDQIKWAIGNSSTLKDSASDPMAKQALDACGELMDYAIDDLLISFDRITDNFDIQKIDDYIEDLKVWLSGALTYQETCLDGFENVTGDTGEKMKNLLKMSKELTANGLGMVSEVTSIMTSFGLPSAGRRLLEESDEQEKEPSWVSDRRGLLQATGATIKADVVVAKDGSGKYKTVSEALNDVPKKSNKTFVIYVKAGVYQEQVMIEKSMTWVMMIGDGPTKTKITAGKNFIDGTPTFKTATVAVIGTNFIAKDMGFENSAGPEKHQAVALRVQSDMSIFYNCQMDGYQDTLYTHAHRQFYRDCTITGTIDFIFGNGAVVFQNCKILVRKPMENQQCIVTAQGRTQRKEPTAIILQNCVISSDPDFFPIRHIHKTYLGRPWKQYSRTIIMQSQIDDLIQPEGWLPWMGDFALNTLFYTEYNNRGPGAAKDKRVKWRGIKQITPEHAFDFTAGRFIRGDPWIKPTGVPYTSGMMAV 568
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 5953726 5955521 - CmPI595203_05g006920.1 Cmu05g0692 415606
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu05g0692 568 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 54 208 IPR035513 -
Cmu05g0692 568 NCBIfam pectinesterase inhibitor domain 51 203 IPR006501 GO:0004857(InterPro)
Cmu05g0692 568 SUPERFAMILY Pectin lyase-like 250 564 IPR011050 -
Cmu05g0692 568 CDD PMEI-like_3 58 210 - -
Cmu05g0692 568 Pfam Plant invertase/pectin methylesterase inhibitor 54 202 IPR006501 GO:0004857(InterPro)
Cmu05g0692 568 PANTHER PECTINESTERASE 10 556 - GO:0030599(PANTHER)|GO:0046910(PANTHER)
Cmu05g0692 568 FunFam Pectinesterase 249 565 - -
Cmu05g0692 568 ProSitePatterns Pectinesterase signature 1. 280 299 IPR018040 -
Cmu05g0692 568 Gene3D Invertase/pectin methylesterase inhibitor family protein 50 208 IPR035513 -
Cmu05g0692 568 FunFam Pectinesterase 52 209 - -
Cmu05g0692 568 SMART PMEI_2 51 204 IPR006501 GO:0004857(InterPro)
Cmu05g0692 568 Pfam Pectinesterase 255 551 IPR000070 GO:0030599(InterPro)|GO:0042545(InterPro)
Cmu05g0692 568 ProSitePatterns Pectinesterase signature 2. 399 408 IPR033131 -
Cmu05g0692 568 Gene3D - 249 565 IPR012334 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu03g2304 Cmu-Chr3:31710891 Cmu05g0692 Cmu-Chr5:5953726 7.70E-198 dispersed
Cmu05g0692 Cmu-Chr5:5953726 Cmu11g0015 Cmu-Chr11:603102 1.80E-135 dispersed
Cmu03g1221 Cmu-Chr3:6743575 Cmu05g0692 Cmu-Chr5:5953726 5.00E-117 transposed
Cmu04g1282 Cmu-Chr4:27179806 Cmu05g0692 Cmu-Chr5:5953726 1.90E-09 transposed
Cmu05g0692 Cmu-Chr5:5953726 Cmu06g0482 Cmu-Chr6:5397785 2.90E-202 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu05g0692 K01051 - csv:101212686 1004.2