Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu05g0703 ATGTCTACAGCCAGTTCGAGTTCTGTAAGGAAAGCTGGTGAAGCTGTTCCCGACCAGTTTCCGGCTGGCCTTCGTGTTCTGGTTGTGGATGATGATCCGACCTGTCTTATGATCTTGGAGAAGATGCTTCGTATTTGCCGCTATGAAGTAACAAATTGTAGTCGAGCCGAGGATGCACTGTCTCTTCTCAGACAGTACAAAAACGGGTTCGATATCGTTTTGAGTGACGTCCACATGCCAGACATGGATGGATTCAAACTTCTGGAATACATTGGATTGGAAATGGACTTGCCTGTAATCATGATGTCGGTGGATGATGGGAAAAACGTCGTCATGAAGGGAGTGACTCATGGTGCTTGTGACTATTTAATAAAACCTGTTCGAATTGAAGCGCTGAAGAACATATGGCAGCACGTTGTTCGCAAGCGGAAGAATGAATGGAAGGACTTGGAGCAATCTGGATGTGTTGACGATGCAGATCGGCAGCAAAAAACTAATGAAGATGCAGATTATTCATCATCTGCTAATGAAGGGAGTTGGAGGAATTCAAAGAGAAGGAAGGATGACGTTGAAGACCCTGAGGAGAGGGACGATTCGTCGACCCTAAAGAAACCAAGGGTCGTTTGGTCTGTTGAGCTCCATCAACAGTTTGTGGCTGCTGTTAATCAACTAGGAATTGATAAGGCTGTTCCCAAGAAGATTCTGGAGTTGATGAATGTCCCTGGACTCACTAGAGAAAATGTTGCCAGTCACCTTCAGAAATATCGCTTGTACCTGAGAAGACTAAGTGGAATCACGCAACACCAGAGTAATTTAAACAACACATTCATGAGTGCCCAAGATGCATTTGTCCCGTCGATGAATGGCCTTGATCTTCAAACTCTTGCTGCTGCTGGTCAACTCCAGCCACAAAGCCTTGCTACACTTCAAGCAGCTGGATTTGGTAGGTCTACAGCAAAATCCGGCATGCCTATGCCTCTTGTCGATCAGAGGAACCACATTTTTAGCTTTGAAAATCCAAAGTTGAGATTCGGTGATGGGCAACAACCACACTTGAATGGTAATAAGCCAATGAACCTACTTCATGGAATTCCAACAACTATGGAGCCAAAACAACTTGCTAATCTGCAGCATTCTGCACAATCTCATGGGAACATGACAATGCAAGTTAGTGCCCAAGGAAGCCAATCTAGCTCTCAACTAATGCAGACACCTCAACCACAAGCTCGAGCGCAGATCCTTAACGAAAGCACCTCAACTAGCGTAACAAGGCTTCCACCAACAATGCAGCAGTCAATTTTGCCGAATGGAACTACTGGTGCGGTTTTGGCTAGGAATGAATTTGCCAATAACAGCAGAGGTGGAGGGTACAATCTAGTTTCACCAGCCTCAACAATGTTAAATTTCCCCTTGAATCAAACTGCAGAATTGCCTGGTAATAGTTTTCCTCTTCAAAGTACCCCAGGAATGTCAAGCATTGTACCAAAGGGAAGATTTCCAGACGAGGTTAACTCCGACATTAAAGGATCTGAAGGTTTTGTATCAAGCTATGATATGTTTAGGGATCTCCATCCTCAGAAACCCCATGATTGGGACTTGCAACACGTAGGGCTGACCTTCGATACATCTCAAGGTAGTCTCGACATTCCACCTTCTGCTTTTGCTCACCAAGGGTATGCCTCTAGCCAACAAAATGGACAAAATAGGAATGCATCTACCGCAGGCAAGGCCATGTTCTTATTGGAAGAAGGAAGTGACAATGGTAATGCACAAAGTGTGGGCCATCAACTCAACCCTCTTTTCGTCGATGGTTCGGTGAGAGTTAAAGCTGAAAGAGCTCCTGATACTAGCAATCAAACAGACCTTTTCTCTGACCATTTTGGTCAGGAGGACCTAATGAGTGCACTTCTTAAGCAGCAACAAGGAAGCATTGCAACAGCTGAAAGTGAATTGGAATGGGTGTTTCATCATAATACTCCTGTTTAG 1986 44.71 MSTASSSSVRKAGEAVPDQFPAGLRVLVVDDDPTCLMILEKMLRICRYEVTNCSRAEDALSLLRQYKNGFDIVLSDVHMPDMDGFKLLEYIGLEMDLPVIMMSVDDGKNVVMKGVTHGACDYLIKPVRIEALKNIWQHVVRKRKNEWKDLEQSGCVDDADRQQKTNEDADYSSSANEGSWRNSKRRKDDVEDPEERDDSSTLKKPRVVWSVELHQQFVAAVNQLGIDKAVPKKILELMNVPGLTRENVASHLQKYRLYLRRLSGITQHQSNLNNTFMSAQDAFVPSMNGLDLQTLAAAGQLQPQSLATLQAAGFGRSTAKSGMPMPLVDQRNHIFSFENPKLRFGDGQQPHLNGNKPMNLLHGIPTTMEPKQLANLQHSAQSHGNMTMQVSAQGSQSSSQLMQTPQPQARAQILNESTSTSVTRLPPTMQQSILPNGTTGAVLARNEFANNSRGGGYNLVSPASTMLNFPLNQTAELPGNSFPLQSTPGMSSIVPKGRFPDEVNSDIKGSEGFVSSYDMFRDLHPQKPHDWDLQHVGLTFDTSQGSLDIPPSAFAHQGYASSQQNGQNRNASTAGKAMFLLEEGSDNGNAQSVGHQLNPLFVDGSVRVKAERAPDTSNQTDLFSDHFGQEDLMSALLKQQQGSIATAESELEWVFHHNTPV 661
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 6051007 6054165 + CmPI595203_05g007030.1 Cmu05g0703 415617
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu05g0703 661 PIRSF RR_ARR_type-B 5 651 IPR017053 GO:0003677(InterPro)|GO:0003700(InterPro)|GO:0009736(InterPro)
Cmu05g0703 661 ProSiteProfiles Response regulatory domain profile. 25 140 IPR001789 GO:0000160(InterPro)
Cmu05g0703 661 CDD REC_typeB_ARR-like 26 140 - -
Cmu05g0703 661 Gene3D - 201 263 - -
Cmu05g0703 661 Pfam Response regulator receiver domain 26 134 IPR001789 GO:0000160(InterPro)
Cmu05g0703 661 FunFam Two-component response regulator 200 263 - -
Cmu05g0703 661 SMART REC_2 24 136 IPR001789 GO:0000160(InterPro)
Cmu05g0703 661 SUPERFAMILY CheY-like 23 147 IPR011006 -
Cmu05g0703 661 NCBIfam myb-like DNA-binding domain, SHAQKYF class 204 257 IPR006447 GO:0003677(InterPro)
Cmu05g0703 661 PANTHER TWO-COMPONENT RESPONSE REGULATOR 19 346 IPR045279 GO:0009736(InterPro)
Cmu05g0703 661 Gene3D - 24 158 - -
Cmu05g0703 661 MobiDBLite consensus disorder prediction 154 202 - -
Cmu05g0703 661 FunFam Two-component response regulator 24 161 - -
Cmu05g0703 661 Pfam Myb-like DNA-binding domain 206 256 IPR001005 -
Cmu05g0703 661 SUPERFAMILY Homeodomain-like 201 261 IPR009057 -
Cmu05g0703 661 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 203 260 IPR017930 -
Cmu05g0703 661 MobiDBLite consensus disorder prediction 180 202 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu05g0703 Cmu-Chr5:6051007 Cmu05g1682 Cmu-Chr5:26887605 6.20E-87 dispersed
Cmu05g0880 Cmu-Chr5:7997211 Cmu05g0703 Cmu-Chr5:6051007 4.90E-45 transposed
Cmu06g0070 Cmu-Chr6:665566 Cmu05g0703 Cmu-Chr5:6051007 2.50E-40 transposed
Cmu05g0703 Cmu-Chr5:6051007 Cmu06g0463 Cmu-Chr6:5224798 1.20E-215 wgd
Cmu05g0703 Cmu-Chr5:6051007 Cmu09g0523 Cmu-Chr9:4815092 3.60E-10 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
6135 PF00072 Response_reg 1.50E-22 CL0304 Cmu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu05g0703 K14491 - csv:101209013 1245.72