Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu05g0720 ATGGACAAAAGAGAGACCGGATTTTTCGTCTTCTCTATCCTTGGGTTTTCGTCGTCTGGCGATCTACTGTTGGATGTCTTGGCTCTTCTTTTCTCCCTCTCCTCTATCCACCTTAGGTTGGGGAGGGGTGATTCTCAACTTTGGTCTCCTAGCCCTTACAAAGAATTCAGTTGTGAATCAAATGGAGAATTTTCATCTTCAGTGAAGGGGAGTTCAAGGGCAGCATTCTATGCTTGGGAAATTGGGTCTCCTTATTGTAGAATTTGTGTTTGGAATGCTTCTGATGGCAGCTTAGTTCACTCTTTGACAGGTCATACTGAATCGACATATGTGCTCGATGTTCATCCTTTCAATCCGAGGATTGCTATGAGTGCTGGATATGATGGAAAGACAATAGTTTGGGATATTTGGGAAGGCACACCAATTCGGATATATGAAATTTCTCATTTCAAACTGGTTGATGGGAAGTTTTCATCAGATGGGACATCAATTATACTTTCAGATGATGTTGGACAGCTATATATATTAAGCACGGGGCAGGGAGAATCCCAACAGGATGCCAAGTACGATCAGTTCTTTCTTGGTGACTATCGCCCACTTATTCAGGATCCTTCCGGCAATGTAGTTGACCAGGAAACCCAACTCAGTACTTACAGAAGGAATTTGCAAGATCTTCTTTCTGACTCAGGCATGATACCTTATCCAGAACCTTATCAGACTGCATACCAGCAAAGACGTTTAGGTGCTATGGGTCTTGAGTGGCGTCCCTCTTCTCTAAAACTTTCTGTTGGGCCCGACTTCAATCTCGACCCAGATTACCAATTGCTGCCTTTGGCAGACTTGGACATGTTGATTGAACCATTGCCTGACATTGTGGATGCAATGGATTGGGGACCAGAAAATGAAGTACAAAGTGAGGATACTGATTCAGAATACAACGTCACTGAAGATTACTCTACTGGTGGGGAGCAAAGAAGTCTAAATTCAAACTGCTCAACGGATCCAGAATGCAGCTCCGAAGACACGGGGATTGACGATGCTCCTGCTGATGGTCTTCGAAGATCAAAAAGGAAAAAACAGAAAGCTGACATGGAAGTCATGACTTCTTCAGGAAGGCGTGTTAAAAGACGAAATATGGATGAGTATGAAGGCGATACTGTCAGGAGTTCCAGAAGTCGGAAGTTAAAATCTGGCCATAAGCCTTCCAAAAAGAAATCAGCATCCAAGTCATTAAGACCTCAAAGAGCGGCTGCACGTAATGCCCGCAATTGGATATCATCATTTAAGGGAAAATCTACCGATGGAGAAGAAGAATATGAGTCAGGAGGTGATTGCTCAGAAAGTGAATCTTCGTTAGAAGATTCAGACATTGAGAGTGATGAATATGAAAGGTCATTGCAAAACAGAAATAAGCATTCAAAAGGGAAAGAAGTATTCCTAGACGGAGCTGAGGAGATTACAAAATCTCTTGATGTTCCTGAATCTCGTGTAGATCCTGGAAACAGAAAGAAGTTGATCCTTAAATTCTCCCTTAAGAATCCAAATAAGGTTGATCCTCCTTCAAACACAGCACTTACTTGTTCCAACATGGCTGATGTGGCTAGCTCATCATCAAGATCACCAAAGGAAGTTATTGAAACCAGTCAGAATCTTATGAGATCTGAGAGGCACTTTGTAAATATTGATGGACATTCTGATTTGACTGAGGTCTACACTAATGGGAACATAAGATGGGGAGGATCCAGGGTTCGTTCTTCCAAGCGCATAAGATTTGGGGACACTGTACCTTCTGATGCATATGCAGTATCTACTTCACTTCCCAATGGCAATCATAATGAAAATGAGAATGCAGTTAATGAATATTTAGAACGAGAAAATCATTTTGGTGCACCATCCCCCCTTGCAGGGGTGCAGAATTATTCTGCAGATGAAATGGACGCAGTATCTCCCACAAATTTGAAGTATGAGGATGATAATGCTTCTGGGCACTCTCAGGAGATGGTTAGTGGTGGAGAGCTTAAATGTGTTAGCAACAGCAAGTCCTGTGATCATGATGATTCAAGTAATTTGAATTTCGTGTTTTCTTCAGTTGCAACCACCACATCAATACAAAATGGGGCTCCTGCTCCTGAGCAAACTGAAAACATTGCACCAATGTGTACAAAGATAAGGTTCAAGAGTATTTCCTTGGATCCTGAACATTCATTGAAGCATAAAATAGAGTCCTTAGATGAAAGCTCGAAGAATGATGAATACAATACAGTATCTGGAAGCCCTCAGCATATAGATGGGCTACAGGATAATGTCATGAATGAAACTTATTCTGATCATAGAAATGATTGCCCACAAGATATGGACATTGCAATGGATGAAAAGCCAGTTTCAACTTTATGCAACTCATCAGAGTTGCAAGCAGTTGAGACAAACAAAATGTACACTGCAGTTTATAAAAGATCTAAGTCAAACAAAGGAAAGAGCAATATAGATAACAACGGTTGTGGCTCTGGAGAACATGCCTCAGGCAACAGTAGTCTACCTGCTGAAGCAGACAATCACAAAATTATGCTTCGGAAGACACGATCTTTAAGGTTTAAGGATTCCTCATATGATCTAAATAATGTGGGTGATGATCCAAAATCAGATGAAGATCAAGAACTTGAACAGAGATCAAGACGTTCTGGAAATTCTTCTGCGAACAGATCCCATATACCAATTGAAGAGTGGGGATCAAGCTCAAGGATGACAGTTGGATCCAGGTCCACTCGAAACAGAAGGGGTACTCTTGCTCAAGACATAAGTCCGGTAGACAGAAGAAAGTCGGTTCAATATCCCAGAAAAGGATCATGGTTAATGATGCCTGCACATGAAGGTGGCTCCAGATATATTCCCCAACTTGGAGATGAAGTTGCGTATCTGAGGCAGGGCCATCATGAATACATAGATCACTGTTGTGCAAATTACTGTCAGACAAAAGACACGGGACCTTGGACCTCAAACCGAGGAACCATACGAGCTGTTGAGTTCTGTAAGGTTGTGGAGCTTGTTTATTCAACTTCTGCAGGTTCTGGAGATAGTTGCTGTAAAATGCTACTCAAGTTCATAGATCCATCTTCCCATGTATACCGCCAATCCTTCAAGTTAACTCTGCCCGAGTTGACTAGTTTCCCTGACTTCTTAGTTGAAAGAACTCGGTTTGAAGCAGCAATGCAGAGGAATTGGACGTTCAGGGACAAGTGCAAAGTGTGGTGGAAAAATGATGTTGGAGTCGATGGTAGTTGGTGGGATGGTCGAATTGTCTCTGTGCAGGCAAAATCTCCTGAGTTCCCAGACAGTCCTTGGGAGAGGTACACAATTAAGTATAGGAGTGATCCTGCTGAACCACATTTACATAGTCCTTGGGAGCTGTATGATACTGTTACTCAGTGGGAACAGCCTAGAATAGATGATGAAAACAAAGCGAAGTTGTTAATGGCCATTGACAAATTAATGTCGCCCTCTATGCAGGGTCGTTATGGGATCCAAGATTTGATGCTTCTCTCACGGAAGACACAATACAAGAACAGGTTCCCTGTGCCATTGTGCCTTGAGATAATCCAGGAAAGATTACAGAACGATTACTACCGAAGCTTGGAAGCTTTGAAGCATGACTTCATGGTAATGCTATCAAATTTCGAGTCGTTTGTGGCAAAGAATGAAGACATGTCAAAGAAAATTAGACGCTTATCGGACTGGTTTGATCGCAACATATCACCTTTATAG 3759 42.06 MDKRETGFFVFSILGFSSSGDLLLDVLALLFSLSSIHLRLGRGDSQLWSPSPYKEFSCESNGEFSSSVKGSSRAAFYAWEIGSPYCRICVWNASDGSLVHSLTGHTESTYVLDVHPFNPRIAMSAGYDGKTIVWDIWEGTPIRIYEISHFKLVDGKFSSDGTSIILSDDVGQLYILSTGQGESQQDAKYDQFFLGDYRPLIQDPSGNVVDQETQLSTYRRNLQDLLSDSGMIPYPEPYQTAYQQRRLGAMGLEWRPSSLKLSVGPDFNLDPDYQLLPLADLDMLIEPLPDIVDAMDWGPENEVQSEDTDSEYNVTEDYSTGGEQRSLNSNCSTDPECSSEDTGIDDAPADGLRRSKRKKQKADMEVMTSSGRRVKRRNMDEYEGDTVRSSRSRKLKSGHKPSKKKSASKSLRPQRAAARNARNWISSFKGKSTDGEEEYESGGDCSESESSLEDSDIESDEYERSLQNRNKHSKGKEVFLDGAEEITKSLDVPESRVDPGNRKKLILKFSLKNPNKVDPPSNTALTCSNMADVASSSSRSPKEVIETSQNLMRSERHFVNIDGHSDLTEVYTNGNIRWGGSRVRSSKRIRFGDTVPSDAYAVSTSLPNGNHNENENAVNEYLERENHFGAPSPLAGVQNYSADEMDAVSPTNLKYEDDNASGHSQEMVSGGELKCVSNSKSCDHDDSSNLNFVFSSVATTTSIQNGAPAPEQTENIAPMCTKIRFKSISLDPEHSLKHKIESLDESSKNDEYNTVSGSPQHIDGLQDNVMNETYSDHRNDCPQDMDIAMDEKPVSTLCNSSELQAVETNKMYTAVYKRSKSNKGKSNIDNNGCGSGEHASGNSSLPAEADNHKIMLRKTRSLRFKDSSYDLNNVGDDPKSDEDQELEQRSRRSGNSSANRSHIPIEEWGSSSRMTVGSRSTRNRRGTLAQDISPVDRRKSVQYPRKGSWLMMPAHEGGSRYIPQLGDEVAYLRQGHHEYIDHCCANYCQTKDTGPWTSNRGTIRAVEFCKVVELVYSTSAGSGDSCCKMLLKFIDPSSHVYRQSFKLTLPELTSFPDFLVERTRFEAAMQRNWTFRDKCKVWWKNDVGVDGSWWDGRIVSVQAKSPEFPDSPWERYTIKYRSDPAEPHLHSPWELYDTVTQWEQPRIDDENKAKLLMAIDKLMSPSMQGRYGIQDLMLLSRKTQYKNRFPVPLCLEIIQERLQNDYYRSLEALKHDFMVMLSNFESFVAKNEDMSKKIRRLSDWFDRNISPL 1252
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 6199549 6209337 - CmPI595203_05g007200.1 Cmu05g0720 415634

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmu05g0720 1252 Pfam Bromodomain 1183 1238 IPR001487 GO:0005515(InterPro)
Cmu05g0720 1252 ProSiteProfiles Trp-Asp (WD) repeats profile. 102 144 IPR001680 GO:0005515(InterPro)
Cmu05g0720 1252 MobiDBLite consensus disorder prediction 314 338 - -
Cmu05g0720 1252 SUPERFAMILY TolB, C-terminal domain 81 178 - -
Cmu05g0720 1252 CDD Bromo_WDR9_I_like 1128 1250 - -
Cmu05g0720 1252 MobiDBLite consensus disorder prediction 868 940 - -
Cmu05g0720 1252 MobiDBLite consensus disorder prediction 393 410 - -
Cmu05g0720 1252 SMART bromo_6 1148 1251 IPR001487 GO:0005515(InterPro)
Cmu05g0720 1252 Gene3D - 60 192 IPR015943 GO:0005515(InterPro)
Cmu05g0720 1252 MobiDBLite consensus disorder prediction 868 890 - -
Cmu05g0720 1252 FunFam Bromodomain and WD repeat-containing protein 81 191 - -
Cmu05g0720 1252 PANTHER WD REPEAT DOMAIN 9 85 1245 IPR052060 GO:0005634(PANTHER)|GO:0006357(PANTHER)|GO:0007010(PANTHER)|GO:0008360(PANTHER)
Cmu05g0720 1252 SUPERFAMILY Bromodomain 1184 1250 IPR036427 GO:0005515(InterPro)
Cmu05g0720 1252 ProSitePatterns Trp-Asp (WD) repeats signature. 122 136 IPR019775 -
Cmu05g0720 1252 MobiDBLite consensus disorder prediction 820 847 - -
Cmu05g0720 1252 MobiDBLite consensus disorder prediction 742 765 - -
Cmu05g0720 1252 SMART WD40_4 95 135 IPR001680 GO:0005515(InterPro)
Cmu05g0720 1252 MobiDBLite consensus disorder prediction 891 928 - -
Cmu05g0720 1252 MobiDBLite consensus disorder prediction 300 476 - -
Cmu05g0720 1252 MobiDBLite consensus disorder prediction 439 460 - -
Cmu05g0720 1252 MobiDBLite consensus disorder prediction 749 765 - -
Cmu05g0720 1252 MobiDBLite consensus disorder prediction 461 476 - -
Cmu05g0720 1252 MobiDBLite consensus disorder prediction 820 848 - -
Cmu05g0720 1252 Gene3D - 1175 1252 IPR036427 GO:0005515(InterPro)
Cmu05g0720 1252 Coils Coil 208 228 - -
Cmu05g0720 1252 MobiDBLite consensus disorder prediction 346 392 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu05g0720 K11797 - - csv:101214610 2110.11
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g84 . . . . . . . . . . Cma06g01559 Cma14g01594 Car06g01323 Car14g01407 Sed12g0779 Cpe08g00155 Cpe03g01333 Bhi01g01082 Tan10g1069 Cmetu06g1713 . Hepe05g1390 . Lcy11g1346 . . . . . . . . . Cone7ag0105 Cone4ag0108 Lsi05g01586 . . Cme06g00781 Blo02g00479 Blo07g00153 Bda11g00507 Bda13g00214 . Bpe13g00691 Bma02g00927 . . Cmo06g01556 Cmo14g01626 . . . . . . . . . . . . . Cla05g00697 Cam05g0765 Cec05g0774 . . Cmu05g0720 . . Csa03g01511 Chy06g00747 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004915 2 1 2 1 1 1 2 1 1 1 1 1 3 1 1 2 1 4 2 1 1 1 1 1 1 1 1 1 1 2 41