Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cmu05g0730 | ATGGTTTCTAGTAATCGAGGGACGCATTCACATCAACAACAAGCACAGTCTTCGAACACGAATACGAGCAATTTGCGATCTCATCGTACAGATTCCATCAGCAAAGCTATAGCGCAGTACACAGCTGATGCTCGTCTTCACGCGGTGTTTGAGCAGTCAGGTGAGTCTGGAAAATCTTTTGACTACTCACAATCTATAAGAACTTCGACTCAATCTGTGCCGGAGCAGCAAATTACTGCTTATTTGTCGAAGATTCAAAGGGGTGGCCATATTCAGCCCTTTGGATGTATGATAGCTATAGAAGAGGCTAGTTTTCGGGTTATTGCATACAGTGAGAACGCGAGGGAATTGCTCGGTCTAACGCCTCAATCAGTGCCGAGCCTTGAAAAACCTGAGATCCTTACAATTGGGACTGATGTACGGAACTTGTTCACTTCCAACAGTGCAATTCTGCTGGAGAAGGCATTTGGGGCTCGAGAAATCACTTTGTTGAACCCGGTTTGGATTCATTCCAAGAATTCTGGGAAGCCCTTTTACGCAATTCTGCATAGGATTGATGTGGGAATTGTGATTGATTTGGAGCCTGCAAGAACGGAGGATCCCGCCCTTTCTATTGCTGGGGCAGTACAATCGCAGAAGCTTGCCGTACGTGCAATTTCTCAGTTACAAGCACTTCCTGGTGGAGATATTAAACTGTTGTGTGATACTGTGGTTGAGAGTGTTAGGGAGCTTACTGGATATGATAGAGTTATGGTGTATAAGTTTCATGAGGATGAGCATGGTGAGGTTGTGGCTGAAAGCAAGAGGCCTGACTTAGAGCCATACATTGGATTGCATTACCCTTCTACTGATATTCCTCAGGCATCAAGGTTTTTGTTTAAGCAAAACCGCGTTAGGATGATTGTTGATTGTCATGCCTCTCCAGTTCGTGTGATTCAGGATGCAGGGCTTATGCAACATCTCTGCTTGGTGGGTTCAACTCTTCGTGCTCCCCATGGCTGCCATGCCCAGTATATGGCCAATATGGGCTCCATTGCTTCATTAGCAATGGCGGTTGTTATCAATGGTAATGATGATGAAGCTATTGGTGGACGAAACTCAATGAGGCTTTGGGGTTTGGTTGTATGCCACCATACTTCTGCTCGGTGTATTCCGTTTCCGCTCCGGTATGCGTGTGAGTTTCTAATGCAAGCCTTCGGGCTTCAACTGAACATGGAGTTGCAGTTGGCTTCACAGATGTCTGAGAAACATGTTTTGAGGACTCAAACTCTCTTGTGTGACATGCTTCTTCGTGATTCCCCAGCTGGCATTGTTACACAGAGTCCAAGCATCATGGACCTAGTAAAGTGTGATGGGGCAGCTCTTTACTATCAAGGGAAATATTACCCTCTGGGTGTGACGCCAACTGAGGCCCAAATAAAGGATATTGTGGAATGGTTGTTGGCTTTCCACGGAGATTCAACTGGTTTAAGTACAGATAGCTTGGCTGATGCTGGATATCCAGGGGCTGCCTTGCTGGGTGATGCAGTTTGTGGAATGGCTGTAGCTTACATCACAAAAAAGGATTTTCTATTTTGGTTCCGATCTCATACAGCAAAAGAGATCAAGTGGGGTGGTGCAAAGCATCACCCAGAGGATAAGGATGATGGTCAAAGAATGCATCCGCGTTCTTCATTCAAGGCATTCTTGGAAGTGGTAAAGTCCCGTAGTTTACCATGGGAGAATGCAGAAATGGACGCAATTCACTCATTGCAGCTTATTCTACGAGATTCATTTAAGGATGATGTGGCAATCAATTCAAAAGCAGTTGTGCACCCTCAACTAGGGGATCTTGACTTGCAAGGGATTGATGAGCTCAGCTCAGTTGCAAGAGAAATGGTCAGGTTGATTGAGACTGCAACTGCTCCTATCTTTGCTGTAGATGCTGATGGTCGTATCAATGGATGGAATGCTAAGATAGCTGAGTTGAGTGGGCTTGCGGTTGAGGAAGCTATGGGGAAATCCTTAGTTCGTGATCTTGTGTACAAAGAATCTGAAGAAATAGTTGACAAACTTGTTTCCCGGGCTTTAAAAGGTGAAGAAGATAAAAGTGTAGAGATAAAAATGAGGACATTTGGGCCAGAAGATCAAAGGACGCCAATCTTTATTGTTGTAAATGCTTGCTCTAGCAGGGACTACACTGATAATATAGTTGGCGCTTGTTTTGTTGGTCAAGATGTTACCTGCCAAAAAGTGTTCATGGACAAATTTGTTAGCATACAAGGTGATTATAAAGCAATTGTTCATAGTCCCAATCCTCTTATCCCTCCAATATTTGCTTCAGACGACAATACATGTTGCTCAGAATGGAATACTGCCATGGAAAAGCTCACTGGATGGTCCAGGGAGGACATAATTGGAAAAATGCTAGTAGGAGAGGTTTTTGGAAGTTGTTGTCGATTGAAGGGTCCGGATGCATTGACCAAATTTATGATTGTCCTGCATAGTGCAATTGGAGGGCAGGACAATGAAAAATACCCCTTTTCTTTTTATGACAAAAAGGGGAAATATGTTCAGGCTCTCTTAACAGCAAATAAGAGGATGAATATGGAGGGTCAGATTGTTGGAGCTTTCTGCTTCTTACAGATAGCTAGTCCTGAATTGCAGCAAACTCTTAGAATGCAGAGGCAACAGGAGAAGAACCGGTTTGCAAGGATGAAAGAGCTGGCTTACATTTGCCAGGAAGTGAAGAGTCCTTTGAGTGGTATACGCTTTACTAACTCACTTTTGGAGGCTACAGATTTGAGTGAAGATCAAAAGCAGTTCCTTGAGACCAGTGTTGCTTGTGAAAAGCAGATGCTAAAGATTATAGAGGATATGGACTTGGAATGTATTGATGACGGTACGATGGAGCTTGAGAAGGGGGAGTTCTTATTGGGAAGTGTTATTAATGCCGTTGTTAGTCAAGTGATGATACTACTCAGAGAAAGAAACTTACAACTGATTCGTGATATACCAGAAGAAGTAAAGACTATGGCTGTCTATGGAGATCAAGTGAGAATTCAACAGGTCTTAGCTGATTTCTTGTTGAATATGGTCCGTTACGCACCCTCTCCAGAAGGCTGGGTAGAAATACGTGTCTGTCCATTCCTGAAGCAAAACTCAGATGGACTTACTCTTGCACACACTGAATTCAGGATTGTATGCCCTGGGGAAGGTCTACCTCCTGAGTTAGTTCAGGACATGTTTCATAGTGGCAGATGGGTGACTCAAGAAGGATTAGGCTTGAGCATGTGCAGAAAGATTTTGAAGCTAATGAATGGTGAAGTCCAATACATCAGAGAGTCTGAAAGATGTTATTTCTTGATTACTCTTGAACTTCCCTTGACAGAGAGAGGCCTAAACGATGTCGGTTAA | 3396 | 43.73 | MVSSNRGTHSHQQQAQSSNTNTSNLRSHRTDSISKAIAQYTADARLHAVFEQSGESGKSFDYSQSIRTSTQSVPEQQITAYLSKIQRGGHIQPFGCMIAIEEASFRVIAYSENARELLGLTPQSVPSLEKPEILTIGTDVRNLFTSNSAILLEKAFGAREITLLNPVWIHSKNSGKPFYAILHRIDVGIVIDLEPARTEDPALSIAGAVQSQKLAVRAISQLQALPGGDIKLLCDTVVESVRELTGYDRVMVYKFHEDEHGEVVAESKRPDLEPYIGLHYPSTDIPQASRFLFKQNRVRMIVDCHASPVRVIQDAGLMQHLCLVGSTLRAPHGCHAQYMANMGSIASLAMAVVINGNDDEAIGGRNSMRLWGLVVCHHTSARCIPFPLRYACEFLMQAFGLQLNMELQLASQMSEKHVLRTQTLLCDMLLRDSPAGIVTQSPSIMDLVKCDGAALYYQGKYYPLGVTPTEAQIKDIVEWLLAFHGDSTGLSTDSLADAGYPGAALLGDAVCGMAVAYITKKDFLFWFRSHTAKEIKWGGAKHHPEDKDDGQRMHPRSSFKAFLEVVKSRSLPWENAEMDAIHSLQLILRDSFKDDVAINSKAVVHPQLGDLDLQGIDELSSVAREMVRLIETATAPIFAVDADGRINGWNAKIAELSGLAVEEAMGKSLVRDLVYKESEEIVDKLVSRALKGEEDKSVEIKMRTFGPEDQRTPIFIVVNACSSRDYTDNIVGACFVGQDVTCQKVFMDKFVSIQGDYKAIVHSPNPLIPPIFASDDNTCCSEWNTAMEKLTGWSREDIIGKMLVGEVFGSCCRLKGPDALTKFMIVLHSAIGGQDNEKYPFSFYDKKGKYVQALLTANKRMNMEGQIVGAFCFLQIASPELQQTLRMQRQQEKNRFARMKELAYICQEVKSPLSGIRFTNSLLEATDLSEDQKQFLETSVACEKQMLKIIEDMDLECIDDGTMELEKGEFLLGSVINAVVSQVMILLRERNLQLIRDIPEEVKTMAVYGDQVRIQQVLADFLLNMVRYAPSPEGWVEIRVCPFLKQNSDGLTLAHTEFRIVCPGEGLPPELVQDMFHSGRWVTQEGLGLSMCRKILKLMNGEVQYIRESERCYFLITLELPLTERGLNDVG | 1131 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 5 | 6316831 | 6322083 | + | CmPI595203_05g007300.1 | Cmu05g0730 | 415644 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cmu05g0730 | 1131 | ProSiteProfiles | Histidine kinase domain profile. | 904 | 1124 | IPR005467 | - | |
| Cmu05g0730 | 1131 | FunFam | Phytochrome | 769 | 877 | - | - | |
| Cmu05g0730 | 1131 | FunFam | Phytochrome | 878 | 959 | - | - | |
| Cmu05g0730 | 1131 | Pfam | Phytochrome region | 420 | 593 | IPR013515 | GO:0006355(InterPro)|GO:0009584(InterPro) | |
| Cmu05g0730 | 1131 | SUPERFAMILY | PYP-like sensor domain (PAS domain) | 770 | 874 | IPR035965 | - | |
| Cmu05g0730 | 1131 | SMART | pas_2 | 624 | 691 | IPR000014 | - | |
| Cmu05g0730 | 1131 | SMART | pas_2 | 755 | 825 | IPR000014 | - | |
| Cmu05g0730 | 1131 | SUPERFAMILY | PYP-like sensor domain (PAS domain) | 627 | 736 | IPR035965 | - | |
| Cmu05g0730 | 1131 | Gene3D | - | 412 | 585 | IPR043150 | - | |
| Cmu05g0730 | 1131 | SUPERFAMILY | GAF domain-like | 209 | 404 | - | - | |
| Cmu05g0730 | 1131 | MobiDBLite | consensus disorder prediction | 1 | 30 | - | - | |
| Cmu05g0730 | 1131 | SMART | HKATPase_4 | 1009 | 1124 | IPR003594 | - | |
| Cmu05g0730 | 1131 | SMART | HisKA_10 | 897 | 961 | IPR003661 | GO:0000155(InterPro)|GO:0007165(InterPro) | |
| Cmu05g0730 | 1131 | Pfam | His Kinase A (phospho-acceptor) domain | 898 | 961 | IPR003661 | GO:0000155(InterPro)|GO:0007165(InterPro) | |
| Cmu05g0730 | 1131 | Pfam | Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase | 1009 | 1122 | IPR003594 | - | |
| Cmu05g0730 | 1131 | SUPERFAMILY | Homodimeric domain of signal transducing histidine kinase | 885 | 953 | IPR036097 | GO:0000155(InterPro)|GO:0007165(InterPro) | |
| Cmu05g0730 | 1131 | CDD | HATPase_Phy-like | 1008 | 1120 | IPR044767 | - | |
| Cmu05g0730 | 1131 | PIRSF | Phytochrome_conventional | 12 | 1129 | IPR012129 | GO:0006355(InterPro)|GO:0009585(InterPro)|GO:0009881(InterPro)|GO:0017006(InterPro)|GO:0042803(InterPro) | |
| Cmu05g0730 | 1131 | Gene3D | - | 210 | 568 | IPR029016 | - | |
| Cmu05g0730 | 1131 | ProSiteProfiles | PAS repeat profile. | 622 | 693 | IPR000014 | - | |
| Cmu05g0730 | 1131 | Pfam | GAF domain | 230 | 407 | IPR003018 | GO:0005515(InterPro) | |
| Cmu05g0730 | 1131 | ProSiteProfiles | Phytochrome chromophore attachment site domain profile. | 229 | 397 | IPR016132 | - | |
| Cmu05g0730 | 1131 | Gene3D | PAS domain | 618 | 749 | - | - | |
| Cmu05g0730 | 1131 | PRINTS | Phytochrome signature | 644 | 659 | IPR001294 | GO:0006355(InterPro)|GO:0009584(InterPro) | |
| Cmu05g0730 | 1131 | PRINTS | Phytochrome signature | 718 | 735 | IPR001294 | GO:0006355(InterPro)|GO:0009584(InterPro) | |
| Cmu05g0730 | 1131 | PRINTS | Phytochrome signature | 555 | 573 | IPR001294 | GO:0006355(InterPro)|GO:0009584(InterPro) | |
| Cmu05g0730 | 1131 | PRINTS | Phytochrome signature | 522 | 541 | IPR001294 | GO:0006355(InterPro)|GO:0009584(InterPro) | |
| Cmu05g0730 | 1131 | PRINTS | Phytochrome signature | 437 | 457 | IPR001294 | GO:0006355(InterPro)|GO:0009584(InterPro) | |
| Cmu05g0730 | 1131 | PRINTS | Phytochrome signature | 625 | 641 | IPR001294 | GO:0006355(InterPro)|GO:0009584(InterPro) | |
| Cmu05g0730 | 1131 | PRINTS | Phytochrome signature | 244 | 263 | IPR001294 | GO:0006355(InterPro)|GO:0009584(InterPro) | |
| Cmu05g0730 | 1131 | PRINTS | Phytochrome signature | 738 | 758 | IPR001294 | GO:0006355(InterPro)|GO:0009584(InterPro) | |
| Cmu05g0730 | 1131 | PRINTS | Phytochrome signature | 144 | 166 | IPR001294 | GO:0006355(InterPro)|GO:0009584(InterPro) | |
| Cmu05g0730 | 1131 | PRINTS | Phytochrome signature | 329 | 350 | IPR001294 | GO:0006355(InterPro)|GO:0009584(InterPro) | |
| Cmu05g0730 | 1131 | PANTHER | OS08G0260000 PROTEIN | 18 | 1001 | - | - | |
| Cmu05g0730 | 1131 | CDD | PAS | 633 | 740 | IPR000014 | - | |
| Cmu05g0730 | 1131 | ProSitePatterns | Phytochrome chromophore attachment site signature. | 329 | 338 | IPR013516 | - | |
| Cmu05g0730 | 1131 | Gene3D | PAS domain | 84 | 332 | - | - | |
| Cmu05g0730 | 1131 | ProSiteProfiles | PAS repeat profile. | 756 | 808 | IPR000014 | - | |
| Cmu05g0730 | 1131 | FunFam | Phytochrome | 960 | 1126 | - | - | |
| Cmu05g0730 | 1131 | FunFam | Phytochrome | 412 | 542 | - | - | |
| Cmu05g0730 | 1131 | SUPERFAMILY | ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase | 972 | 1121 | IPR036890 | - | |
| Cmu05g0730 | 1131 | Gene3D | - | 878 | 959 | - | - | |
| Cmu05g0730 | 1131 | Gene3D | - | 960 | 1126 | IPR036890 | - | |
| Cmu05g0730 | 1131 | FunFam | Phytochrome | 618 | 750 | - | - | |
| Cmu05g0730 | 1131 | Pfam | PAS fold | 625 | 740 | IPR013767 | GO:0006355(InterPro) | |
| Cmu05g0730 | 1131 | Pfam | PAS fold | 756 | 875 | IPR013767 | GO:0006355(InterPro) | |
| Cmu05g0730 | 1131 | SUPERFAMILY | GAF domain-like | 415 | 592 | - | - | |
| Cmu05g0730 | 1131 | SMART | gaf_1 | 229 | 417 | IPR003018 | GO:0005515(InterPro) | |
| Cmu05g0730 | 1131 | SUPERFAMILY | PYP-like sensor domain (PAS domain) | 85 | 199 | IPR035965 | - | |
| Cmu05g0730 | 1131 | CDD | PAS | 767 | 875 | IPR000014 | - | |
| Cmu05g0730 | 1131 | CDD | HisKA | 897 | 953 | IPR003661 | GO:0000155(InterPro)|GO:0007165(InterPro) | |
| Cmu05g0730 | 1131 | Pfam | PAS fold | 80 | 196 | IPR013654 | GO:0006355(InterPro) | |
| Cmu05g0730 | 1131 | NCBIfam | PAS domain S-box protein | 629 | 741 | IPR000014 | - | |
| Cmu05g0730 | 1131 | Gene3D | PAS domain | 769 | 877 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cmu03g1310 | Cmu-Chr3:8230147 | Cmu05g0730 | Cmu-Chr5:6316831 | 0.00E+00 | dispersed | |
| Cmu05g0730 | Cmu-Chr5:6316831 | Cmu08g0850 | Cmu-Chr8:20777652 | 0.00E+00 | dispersed |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cmu05g0730 | K12121 | - | csv:101212197 | 2216.04 |