Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu05g0793 ATGGAGAAGGAATTCTTCATGAACGATGCTGGATGCAGTTTTTATGGAATGGAAATCCAACCTAATGAGCTGAATTCAAGTGGGTTGTTTAATCCCAATTGGGAAAATTCGATGGATCAGAGCGATCTCTTTGAGTCTACTTTGAGTTCGATTGTGTCTTCTCCGGCGAATTCTCACGTTATTGGCGGCGGCGGTGGCGGTGGAGACAACTTGATGATGCGAGAATTGATCGGAAGGCTTGGGAGTATTTGCAATTCTGGTGAGATTTCGCCTCATTCTTACATTGGTGGAACGAATAACAATAGTACGAACACTTCTTGTTACAATACGCCTTTGAATTCTCCTCCCAAGCTTAATTTATCGTCGATCATGGAGTCTCAGATCAGAGGGAATTTGATTCCCCATCATCAAAACCTTGCCCCATTTTCAGCTGATCCTGGTTTTGCTGAGAGGGCTGCGAGATTTTCTTGTTTTGGGAACAGGAATCTTGGGGGATTGAATGGCCAATTGGGTTCTAATGAAACTCAAGAATTGAGTAACAGATCAATTGCTGGAGCTGGAGTGGAATCTGGAAAGCTTTCTAGAGTGTCAAGTAACAAATCCTTCAACATTGGTGGAATTGGATCTCAAACGGGGGTTCAAGAAGGCGAGCAGCAAAGCCCAGTTCAAAAGGTGAATTCAATGCCAATCCCTAACAAGAAAGTACTGAACAGGTTTTCGAGGTCTTCAACCCCCGAAAATGCCGGTGATTCGCGAGAGGGATCTTCGGTTTCCGAGCAGATTACAATTGGGGAATTGGGTTTGAAAGGTAAAGCTGAAACCAACACTAGAAAAAGGAAATCAGTTCAAACTGGTCAAGCAAAAGATGTGAAGGCTGCAGTAGAGAACCATGAATCAAATGGAAAGAAAATCAAACCAGATGAAGTTACTAAGAAAGAGATTGATGCTGCAAAAGGGAAGTCAGAGGCAAAAGATGGCACAAAAGCTTCAGGGGATCCAAATCAGAAACAAAACAATGATAATTCAAAGCCTCCTGAGCCTCCAAAGGATTATATCCATGTCAGAGCTAGAAGGGGTCAAGCTACAGATAGTCACAGTTTGGCTGAAAGAGTTCGACGTGAGAAAATCAGCAAACGGATGAAGTTTCTTCAGGATCTCGTCCCTGGTTGCAATAAGGTAACTGGGAAGGCAGTCATGCTTGATGAAATTATAAACTATGTTCAGTCTTTGCAGCGCCAAGTCGAGTTTCTTTCAATGAAATTGGCAACTGTGAATCCAAGGATGGATTTTAACATGGAGACCCTTGTACCAAAGGATATCTTCAAAGGTCCCGGTTCTTCACCGCATACGGGTTACCCTATGGATTCATCTGTGCCCCAATTTGCATATGATTATCAATCTATGCACATGCCACCTCTTCATAGTAGCATTTCTAATGGGACAGAGAAACAATTCTCAGTTGCCTCAGCAAGTGGTGTGATGCAAAGAAATCTAAGCGGGCAAATGCCGAGCGGATACAACGAAGTCGTGAACGGAATCCAAATTTCAAAGTTCTGGGAAGATGAACTCCACACTGTAGTTCAGATGGGTTATGGACAAAACCAACTGCAGAATGCTAATGATGAGATGAAAAGTGAATTGTAG 1644 42.94 MEKEFFMNDAGCSFYGMEIQPNELNSSGLFNPNWENSMDQSDLFESTLSSIVSSPANSHVIGGGGGGGDNLMMRELIGRLGSICNSGEISPHSYIGGTNNNSTNTSCYNTPLNSPPKLNLSSIMESQIRGNLIPHHQNLAPFSADPGFAERAARFSCFGNRNLGGLNGQLGSNETQELSNRSIAGAGVESGKLSRVSSNKSFNIGGIGSQTGVQEGEQQSPVQKVNSMPIPNKKVLNRFSRSSTPENAGDSREGSSVSEQITIGELGLKGKAETNTRKRKSVQTGQAKDVKAAVENHESNGKKIKPDEVTKKEIDAAKGKSEAKDGTKASGDPNQKQNNDNSKPPEPPKDYIHVRARRGQATDSHSLAERVRREKISKRMKFLQDLVPGCNKVTGKAVMLDEIINYVQSLQRQVEFLSMKLATVNPRMDFNMETLVPKDIFKGPGSSPHTGYPMDSSVPQFAYDYQSMHMPPLHSSISNGTEKQFSVASASGVMQRNLSGQMPSGYNEVVNGIQISKFWEDELHTVVQMGYGQNQLQNANDEMKSEL 547
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 7021989 7024305 - CmPI595203_05g007930.1 Cmu05g0793 415707
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu05g0793 547 MobiDBLite consensus disorder prediction 236 262 - -
Cmu05g0793 547 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 358 430 IPR036638 GO:0046983(InterPro)
Cmu05g0793 547 SMART finulus 366 416 IPR011598 GO:0046983(InterPro)
Cmu05g0793 547 CDD bHLH_AtBPE_like 350 435 - -
Cmu05g0793 547 MobiDBLite consensus disorder prediction 206 351 - -
Cmu05g0793 547 Pfam Helix-loop-helix DNA-binding domain 364 411 IPR011598 GO:0046983(InterPro)
Cmu05g0793 547 MobiDBLite consensus disorder prediction 206 227 - -
Cmu05g0793 547 FunFam Basic helix-loop-helix transcription factor 357 430 - -
Cmu05g0793 547 MobiDBLite consensus disorder prediction 330 344 - -
Cmu05g0793 547 Gene3D - 357 431 IPR036638 GO:0046983(InterPro)
Cmu05g0793 547 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 140 491 IPR024097 GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(InterPro)
Cmu05g0793 547 MobiDBLite consensus disorder prediction 271 329 - -
Cmu05g0793 547 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 360 410 IPR011598 GO:0046983(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu05g0793 Cmu-Chr5:7021989 Cmu09g0819 Cmu-Chr9:7926626 1.60E-67 dispersed
Cmu05g0793 Cmu-Chr5:7021989 Cmu02g0518 Cmu-Chr2:4806900 6.20E-40 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
6143 PF00010 HLH 1.20E-05 No_clan Cmu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu05g0793 - - - 0.0