Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu05g0802 ATGGACAAGGAAAAGCCCCAATGCCATGGGGGAGGATTTCTTCACCAATCAAGTCGTTACTCGGGGTTTTCATCTGCTGAAACTAGTTTCAATGGAAAATCTGAAGCAACCTCGTCTTCAATGTCATTCCCTCCATTGGCTCCCAGTACTAATTCTGATTGGGCTCAATCTGGCCGTGGAATGTCCACCGATTCCGCTCGGTTCAGCCATGATATTAGTCGGATGCCTGAAAATCCACGGCGAAATGTTGGTCATCGGCGTGCCCATTCAGAGATCTTGACCCTCCCAGATGATATTTGTTTCGATAGTGATCTTGGTATTATTGGTGGGGCTGATGGTCCTTCTCTTTCTGATGATACTGAGGAAGATTTGTTGTCCATGTACCTTGACATGGATAAATTCAATTCCTCGACTGCTACTTCTGCAACTCAAGTGGGCGATTCATCTTCCCCTCTTGTAGAAGCAGCAGCAACTTCTACAGATGATATTGCTGTTGGTTTGAAGGAGAGGCCGAGAGTTAGACATCAGCATAGCCAGTCCATGGACGGCTTGACAAACATCAAACCTGAGATGCTTGTCTCTGGGTCTGACGAAGCCTCTGCAGCTGATACCAAGAAAGCCATGTCAGCTGCAAAGCTTGCTGAGCTTGCTTTGATTGACCCCAAACGAGCAAAAAGGATATGGGCAAACAGACAGTCAGCTGCGAGGTCAAAGGAAAGAAAGATGCGATACATTGCTGAGCTTGAACGGAAAGTTCAAACATTGCAAACAGAGGCTACTTCTTTGTCCACTCAGTTGACCCTATTACAGAGAGATGCAAATGGTATCACTGCTGAGAACAGTGAACTAAAGCTGCGGTTGCAGACAATGGAACAGCAAGTTCACCTGCAAGACGCTTTAAATGAAGCACTGAAAGAAGAAATTCAGCATTTGAAAGTCTTGACTGGCCAAGCAATGCCAAACGGTAGATCAATTACAAACTTTGCTTCCTTTGGAGCCGGCCAACAATTCTATCCTCCAAACAATCAAGCAATGCATACTTTGTTGACTGCGCAGCAGTTTCAACAACTTCAAATACAATCCCAACAGCAACAGCAACAGCATTTTCAGTACCAACAGCTGCATCAGCTTCAACAACAACAGGCTGGAGACATCAGAATGAAAGGATCCATATCTCCTCAGAGTTTGAAAGACTCTGCATCGGACACAAAGCCGTCTACCACTTGTTGA 1230 45.45 MDKEKPQCHGGGFLHQSSRYSGFSSAETSFNGKSEATSSSMSFPPLAPSTNSDWAQSGRGMSTDSARFSHDISRMPENPRRNVGHRRAHSEILTLPDDICFDSDLGIIGGADGPSLSDDTEEDLLSMYLDMDKFNSSTATSATQVGDSSSPLVEAAATSTDDIAVGLKERPRVRHQHSQSMDGLTNIKPEMLVSGSDEASAADTKKAMSAAKLAELALIDPKRAKRIWANRQSAARSKERKMRYIAELERKVQTLQTEATSLSTQLTLLQRDANGITAENSELKLRLQTMEQQVHLQDALNEALKEEIQHLKVLTGQAMPNGRSITNFASFGAGQQFYPPNNQAMHTLLTAQQFQQLQIQSQQQQQQHFQYQQLHQLQQQQAGDIRMKGSISPQSLKDSASDTKPSTTC 409
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 7118877 7124277 - CmPI595203_05g008020.1 Cmu05g0802 415716
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu05g0802 409 SMART brlzneu 218 282 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Cmu05g0802 409 SUPERFAMILY Leucine zipper domain 222 272 IPR046347 GO:0003700(InterPro)|GO:0006355(InterPro)
Cmu05g0802 409 Coils Coil 238 307 - -
Cmu05g0802 409 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 220 283 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Cmu05g0802 409 MobiDBLite consensus disorder prediction 17 69 - -
Cmu05g0802 409 MobiDBLite consensus disorder prediction 70 86 - -
Cmu05g0802 409 Gene3D - 221 273 - -
Cmu05g0802 409 CDD bZIP_plant_RF2 223 272 IPR044759 GO:0003700(InterPro)|GO:0006355(InterPro)
Cmu05g0802 409 MobiDBLite consensus disorder prediction 1 86 - -
Cmu05g0802 409 PANTHER TRANSCRIPTION FACTOR POSF21-RELATED 69 381 - GO:0003700(PANTHER)|GO:0005634(PANTHER)
Cmu05g0802 409 Pfam bZIP transcription factor 222 270 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Cmu05g0802 409 MobiDBLite consensus disorder prediction 390 409 - -
Cmu05g0802 409 FunFam probable transcription factor PosF21 221 274 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu05g0802 Cmu-Chr5:7118877 Cmu07g0562 Cmu-Chr7:6859893 2.20E-50 dispersed
Cmu05g0799 Cmu-Chr5:7085110 Cmu05g0802 Cmu-Chr5:7118877 2.90E-154 proximal
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
6145 PF00170 bZIP_1 1.00E-08 CL0018 Cmu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu05g0802 - - - 0.0