Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu05g0821 ATGACTGAGTTCAAGAAAATGGTGATCCAATTTGCCATGGAAAGAGCTCTGAATGCTGAGAGTTACACGAAAGATGTCGGCTCCAAGTGCCGAAACGGGAAGGAAAAGGCAGCTTGGGCTGATTGTTTAAAGCTTTACCAAAACACCATCCTTCAACTCAACCAAACTCTAGATTCCTCTACTAGCTGTACTGATTTCGATATCCAAACCTGGCTTAGTACTGCCTTAACCAACCTCGAAACATGTCGCACCGGGTTCGCCGAGCTTAATGTCTCAGACTATATATTACCGATGATCATGTCGAACAATGTCACAAGGCTAATAAGCAACAGTTTGGCTATTAACAATGCTTCAGGAGGTGTGGTATTGGGGAAGGAAACATATAAAAAGGGTTTTCCAAGTTGGGTTTCAGGTGGTGATAGGAGGTTATTGCAGTCGTCGTCGTCGTCGTCTTCAATAAAGGTGGACATTGTGGTGGCTCAGGACGGGTCCGGTAATTATACGACGGTCGGAGCTGCGGTAGAGGAAGCTGGGAAAAGGAAGGGAAATGGGAGATTTGTTATACAAGTAAAGAGAGGGGTTTATGAAGAAAATGTGGAGATAGGAAGTAAGATGAAGAATATAATGTTGATTGGAGATGGAATGAGATTTACTTTCATTACTGGAAATAGAAGTGTTGGAGGAGGCTCCACCACTTTCAATTCTGCTACTGTTGCGGTGACTGGTGAAGGATTTATAGCTCGAGGCATCACATTCCGAAACACCGCAGGTCCTGAAAACCATCAAGCAGTAGCTCTCCGATCAAGCGCGGATCTTTCGGTTTTCTACCGTTGTGCATTCGAAGGATATCAAGACACCCTCTACGTGCATTCACAAAGACAATTCTATAAAGAGTGTTATATTTACGGTACAGTAGATTTCATATTTGGAAATGGTGCAGTTGTTGTACAAAACTGCATGATTTACGCAAGGAAGCCAATGAATGGTCAGAAAAATGCAGTGACCGCTCAAGGACGCACTGACCCAAATCAAAACACTGGCATTTCAATTCACAATTCACGAGTGATGGCTACAGATGATTTGAAAGCAGTGGAGAGCAGAGTGAAAACTTACTTAGGAAGGCCATGGAAGGAGTATTCTCGAACAGTTTTCATGAAAACTTACCTTGATAATTTGGTTGATCCAGTGGGTTGGTTGGAATGGGATGGTGAATTTGCACTTAATACTTTATATTATGGAGAGTATAAGAATATTGGTCCTCGTTCATCCACTACTCAGCGAGTGAATTGGAAAGGCTATCGTGTTATAACCAATGAAACTGAGGCATCAGAGTTTAGTGTCCAAAATTTCATTGCTGGCCAGTCGTGGTTGCCGGATACAGAGGTCCCATTCACTCCTGGACTTTAG 1407 43.0 MTEFKKMVIQFAMERALNAESYTKDVGSKCRNGKEKAAWADCLKLYQNTILQLNQTLDSSTSCTDFDIQTWLSTALTNLETCRTGFAELNVSDYILPMIMSNNVTRLISNSLAINNASGGVVLGKETYKKGFPSWVSGGDRRLLQSSSSSSSIKVDIVVAQDGSGNYTTVGAAVEEAGKRKGNGRFVIQVKRGVYEENVEIGSKMKNIMLIGDGMRFTFITGNRSVGGGSTTFNSATVAVTGEGFIARGITFRNTAGPENHQAVALRSSADLSVFYRCAFEGYQDTLYVHSQRQFYKECYIYGTVDFIFGNGAVVVQNCMIYARKPMNGQKNAVTAQGRTDPNQNTGISIHNSRVMATDDLKAVESRVKTYLGRPWKEYSRTVFMKTYLDNLVDPVGWLEWDGEFALNTLYYGEYKNIGPRSSTTQRVNWKGYRVITNETEASEFSVQNFIAGQSWLPDTEVPFTPGL 468
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 7424347 7427025 - CmPI595203_05g008210.1 Cmu05g0821 415735
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu05g0821 468 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 3 116 IPR035513 -
Cmu05g0821 468 ProSitePatterns Pectinesterase signature 2. 301 310 IPR033131 -
Cmu05g0821 468 Pfam Pectinesterase 156 453 IPR000070 GO:0030599(InterPro)|GO:0042545(InterPro)
Cmu05g0821 468 SMART PMEI_2 1 114 IPR006501 GO:0004857(InterPro)
Cmu05g0821 468 Pfam Plant invertase/pectin methylesterase inhibitor 4 114 IPR006501 GO:0004857(InterPro)
Cmu05g0821 468 NCBIfam pectinesterase inhibitor domain 3 116 IPR006501 GO:0004857(InterPro)
Cmu05g0821 468 Gene3D Invertase/pectin methylesterase inhibitor family protein 1 117 IPR035513 -
Cmu05g0821 468 SUPERFAMILY Pectin lyase-like 152 467 IPR011050 -
Cmu05g0821 468 CDD PMEI-like_3 3 117 - -
Cmu05g0821 468 Gene3D - 149 468 IPR012334 -
Cmu05g0821 468 PANTHER PECTINESTERASE 4 459 - GO:0030599(PANTHER)|GO:0046910(PANTHER)
Cmu05g0821 468 FunFam Pectinesterase 150 468 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu01g0461 Cmu-Chr1:4746036 Cmu05g0821 Cmu-Chr5:7424347 1.10E-195 dispersed
Cmu01g0613 Cmu-Chr1:6776884 Cmu05g0821 Cmu-Chr5:7424347 7.90E-130 dispersed
Cmu02g0060 Cmu-Chr2:625404 Cmu05g0821 Cmu-Chr5:7424347 8.00E-77 dispersed
Cmu02g0062 Cmu-Chr2:630837 Cmu05g0821 Cmu-Chr5:7424347 6.60E-85 dispersed
Cmu05g0260 Cmu-Chr5:2221151 Cmu05g0821 Cmu-Chr5:7424347 9.40E-109 dispersed
Cmu05g0261 Cmu-Chr5:2236342 Cmu05g0821 Cmu-Chr5:7424347 1.30E-153 dispersed
Cmu05g0821 Cmu-Chr5:7424347 Cmu10g1411 Cmu-Chr10:7896311 4.20E-154 dispersed
Cmu05g0821 Cmu-Chr5:7424347 Cmu05g0824 Cmu-Chr5:7455675 5.00E-06 proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu05g0821 K01051 - csv:101211449 857.44