Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu05g0837 ATGGAGGAGAAAGAAACCGGAGTTTCTAGGTTTACAGTTACGAATGATGAAGCCCTAGACAGCTTCCAGGTAGCTCCAAGAACAGAAGCCCTAAAATCAACCGGTGAGTCTAAAGTAACGGAGCTCGCGGCAGCTGCTCCACCACCGGGGTTTTCAGCGGCGGCTGATGCACCACCGGCGAGTGTAGCGGTTTCTAGTACTGAAACAAAGAAGAAGAGAGGGAGACCGAGAAAGTACGGACCGGATGGGAAGCGGTCACTGACATTGGCGTTGTCTCCGATGCCGATATCGTCGTCAATTCCACTGACTGGAGAGTTCCCGAATTGGAAACGAGATAACGAGATTTCTCAAGCGATAATCAAGAAGCCGCAGAGATTCGAGTTTGAGAATCCCGGTCAGAGACTTGCATACTCTGTTGGTGCAAATTTTACTCCCCATGTGATCACTGTCAATGCTGGAGAGGACATTACAATGAAGGTTATGTCTTTCTCTCAACAAGAATCCCGGGCTATTTGCATTCTTTCTGCAAATGGTACAATTTCAAATGTTACACTTCGACAGGCAACTTCTTCCGGAGGTACCTTAACGTATGAGGGTCGTTTTGAAATACTTGCATTGACCGGATCATATATGCCTACACAGAATGGAGCTACAAAGAGCAGATGTGGTGGGATGAGCGTCTCGCTTGCGGGTCAAGATGGGCGAGTCGTTGGCGGTGGACTTGCTGGTTTGTTGGTAGCTGCTGGTCCTGTGCAAGTTGTGGTAGGCAGTTTCCTTCCAGGTCACCAGCAAGAACAGAAGCCAAAAAAGCCTAGAAACGAGTCCACAACCATTTTCTTTCCTCCCGTCAACACTGTCACTGGTGAAGAAATGAAGATAATGTATCCTGGCGGTAACAAGCCTATTCTCACGACACCGTCCTATCAAGAACAATATAATCCGCCGTCCCCTAGCCCAGTGACAGGCTTCAAAATCTCCTCCACTGACAACTTACCTCTATCTGATCAAGAACCAAAAACACAAAGTCAATCAAACTATGATAGGTGCCCTAGAGTCCATTAG 1062 47.74 MEEKETGVSRFTVTNDEALDSFQVAPRTEALKSTGESKVTELAAAAPPPGFSAAADAPPASVAVSSTETKKKRGRPRKYGPDGKRSLTLALSPMPISSSIPLTGEFPNWKRDNEISQAIIKKPQRFEFENPGQRLAYSVGANFTPHVITVNAGEDITMKVMSFSQQESRAICILSANGTISNVTLRQATSSGGTLTYEGRFEILALTGSYMPTQNGATKSRCGGMSVSLAGQDGRVVGGGLAGLLVAAGPVQVVVGSFLPGHQQEQKPKKPRNESTTIFFPPVNTVTGEEMKIMYPGGNKPILTTPSYQEQYNPPSPSPVTGFKISSTDNLPLSDQEPKTQSQSNYDRCPRVH 353
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 7562881 7566984 - CmPI595203_05g008370.1 Cmu05g0837 415751
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu05g0837 353 Gene3D - 145 275 - -
Cmu05g0837 353 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 48 309 IPR039605 GO:0003680(InterPro)
Cmu05g0837 353 Pfam Plants and Prokaryotes Conserved (PCC) domain 145 258 IPR005175 -
Cmu05g0837 353 CDD DUF296 144 258 IPR005175 -
Cmu05g0837 353 FunFam AT-hook motif nuclear-localized protein 1-like 145 276 - -
Cmu05g0837 353 ProSiteProfiles PPC domain profile profile. 140 283 IPR005175 -
Cmu05g0837 353 MobiDBLite consensus disorder prediction 302 353 - -
Cmu05g0837 353 MobiDBLite consensus disorder prediction 29 85 - -
Cmu05g0837 353 SUPERFAMILY AF0104/ALDC/Ptd012-like 142 264 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu01g0495 Cmu-Chr1:5108335 Cmu05g0837 Cmu-Chr5:7562881 1.20E-88 dispersed
Cmu05g0837 Cmu-Chr5:7562881 Cmu11g0043 Cmu-Chr11:906003 5.00E-67 dispersed
Cmu01g0339 Cmu-Chr1:3560221 Cmu05g0837 Cmu-Chr5:7562881 1.60E-70 wgd
Cmu05g0837 Cmu-Chr5:7562881 Cmu06g0032 Cmu-Chr6:337616 2.10E-20 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu05g0837 - - - 0.0