Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu05g0856 ATGACGGAGGTTTACACTAGAATGCCAAGCGAAGATGATGAAGATTCGCCGGCCAAATGTCGAGAGCGCCGGCGCCGTAGAATAGAGATGAGACGGTTAGCAACAGTATCGTCGGGGAATCCCTCGCCCTCCACCACTCCTCACCACCGGAAAGAGAATCAAACTGGTACCTCCGGTTTTGAGAAGAAGCGTGGTCGGAAGACGGACGGCGACGGTAATCCGGAGATTTCATCGTCTTCGTCATCGGGGGAGGAAGTGAAGACTGTAAGAGCTTCACCATCTGTACCTCAGCCGGTTTTCGGGATGATGTCGGTGTCCGGGAGGTCACGTGAGATGGAGGATGCAGTATCGGTGAGCACGTGCGTTTTAGGTTCAGAAAATTTCCGACGGCAACTCGTGCATTTCTTCGCCGTCTACGATGGACATGGAGGCCCTCACGTGGCAGCGCTTTGTAGGGAGAAGATGCACGTGTTCGTACAGGAGGAATTTTCGCGCGTGATGTGCACGCGCGAGGAAGGTGAGAGTGGCGGCGGTGGAAGCAGCGCGGGAGAGGAGGAGGAGGCGACTTGGAGAAGAGTGATGCAGCGGAGCTTTGAAAGAATGGACGAAATGGCACTCAGTACTTGTGCCTGTGGGAGCGTCGGAGGCCAGTGTGGGTGCCATCCGATGGAGGTGGCTCTCGGCGGCTCCACCGCTGTCGTCGCCGTGCTCACGCCGGATCACATAATCGTCGCCAACTGCGGCGATTCACGCGCTGTCCTTTGCCGAGGAGGAAGGGCCATTCCGCTTTCTAATGATCACAAGCCTGATAGAAATGATGAACTAGCAAGGATTGAAGCAGCTGGAGGACGGGTGATTTTTGTAAATGGAGCTCGGGTTGAAGGAATCCTTGCAATGTCCCGGGCAATAGGAGACAAGTATCTCAAGTCAGTTGTAATATCAGAGCCTGAAATTACATTTACTAAAAGAGAATCAGATGATGAATGTTTAATACTTGCAAGTGATGGTCTGTGGGATGTTCTTTCAAGTGAATTGGCTTGTGAGGTAGCTCGTGAATGTCTCCAAGAAGGAGCAGCGGCTGCTGCTACTACAATAGACCTCAATGCCACACCTCAAATTGAAGAAGAAGGGGCTGGAACTTCATATCCCTCTCGGAGTGCATTGGCTGCTGCATTGCTTACTCGTCTTGCTTTAGGGCGGAAAAGCACGGACAACATCAGTGTCATAGTTATTGATCTGAAGAGGAGCTGA 1251 52.44 MTEVYTRMPSEDDEDSPAKCRERRRRRIEMRRLATVSSGNPSPSTTPHHRKENQTGTSGFEKKRGRKTDGDGNPEISSSSSSGEEVKTVRASPSVPQPVFGMMSVSGRSREMEDAVSVSTCVLGSENFRRQLVHFFAVYDGHGGPHVAALCREKMHVFVQEEFSRVMCTREEGESGGGGSSAGEEEEATWRRVMQRSFERMDEMALSTCACGSVGGQCGCHPMEVALGGSTAVVAVLTPDHIIVANCGDSRAVLCRGGRAIPLSNDHKPDRNDELARIEAAGGRVIFVNGARVEGILAMSRAIGDKYLKSVVISEPEITFTKRESDDECLILASDGLWDVLSSELACEVARECLQEGAAAAATTIDLNATPQIEEEGAGTSYPSRSALAAALLTRLALGRKSTDNISVIVIDLKRS 416
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 7721747 7727860 + CmPI595203_05g008560.1 Cmu05g0856 415770
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu05g0856 416 MobiDBLite consensus disorder prediction 1 95 - -
Cmu05g0856 416 SUPERFAMILY PP2C-like 93 414 IPR036457 -
Cmu05g0856 416 ProSiteProfiles PPM-type phosphatase domain profile. 99 413 IPR001932 -
Cmu05g0856 416 PANTHER PROTEIN PHOSPHATASE 61 412 IPR015655 GO:0004722(PANTHER)|GO:0004722(InterPro)|GO:0005634(PANTHER)|GO:0006470(InterPro)|GO:0035970(PANTHER)
Cmu05g0856 416 FunFam Protein phosphatase 2C 50 121 416 - -
Cmu05g0856 416 CDD PP2Cc 99 413 IPR001932 -
Cmu05g0856 416 ProSitePatterns PPM-type phosphatase domain signature. 135 143 IPR000222 GO:0043169(InterPro)
Cmu05g0856 416 MobiDBLite consensus disorder prediction 54 71 - -
Cmu05g0856 416 MobiDBLite consensus disorder prediction 35 53 - -
Cmu05g0856 416 MobiDBLite consensus disorder prediction 72 88 - -
Cmu05g0856 416 Gene3D - 92 416 IPR036457 -
Cmu05g0856 416 MobiDBLite consensus disorder prediction 1 23 - -
Cmu05g0856 416 Pfam Protein phosphatase 2C 100 365 IPR001932 -
Cmu05g0856 416 SMART PP2C_4 89 411 IPR001932 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu05g0856 Cmu-Chr5:7721747 Cmu05g0992 Cmu-Chr5:9096777 4.70E-64 dispersed
Cmu05g0856 Cmu-Chr5:7721747 Cmu03g0742 Cmu-Chr3:1593010 9.70E-78 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu05g0856 K14497 - csv:101206634 697.967