Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cmu05g0860 | ATGGGAAGGGGAAAAGTAGTGCTTGAGAGAATAGAGAACAAAGTGAATCGTCAAGTTACCTTCTCAAAACGAAGAAATGGGTTATTGAAGAAGGCCTGTGAACTCTCTGTGCTCTGTGATGTTGATGTTGCTCTCATCATTTTCTCTAGTCGTGGAAAGCTCTTTGAATTTGGCAGCACTGACATGAACAAGATCCTTGAGAGATATCACCAGCGATGTTACAGCTCTGGATCAAGCACCAATCTTGATGAGAGTGACATACAGATAGAGGAAGTGTCAAAGCTGAGAGCCAAATATGAATCTCTTCAGCGTTCCCATAGGAACTTTCTTGGAGAAGAACTTGAACCACTGAACCTAAAAGAGTTGCATAATCTTGAGAAACAGTTGGACAAAACTCTTTCACACGCTAGACAGCGGAAGGCTGAGATAATGCTCCAAAAATTAGCAGACTTACGCAAAATGGAGCAGGACCTTGGAGATCAAAATACTCAGCTCAAGTCAAAGCTGGAAGAAGAACAACAATGTATGCAAGAAAAGGAAGGTGGCGAAGAAGATCATCCAATGAATTACGAAGTTGTGGGAGCTGACCCAAACATGAACACCACGAGGTACTTTGATCCCCAAGAAGAAGAAGAAGAGGGCAGGGCCATGATGGAAGCTGGGAATAATGACTTAATCCCAGATTGGCTACTTTGA | 696 | 42.82 | MGRGKVVLERIENKVNRQVTFSKRRNGLLKKACELSVLCDVDVALIIFSSRGKLFEFGSTDMNKILERYHQRCYSSGSSTNLDESDIQIEEVSKLRAKYESLQRSHRNFLGEELEPLNLKELHNLEKQLDKTLSHARQRKAEIMLQKLADLRKMEQDLGDQNTQLKSKLEEEQQCMQEKEGGEEDHPMNYEVVGADPNMNTTRYFDPQEEEEEGRAMMEAGNNDLIPDWLL | 231 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
5 | 7775896 | 7784418 | - | CmPI595203_05g008600.1 | Cmu05g0860 | 415774 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cmu05g0860 | 231 | FunFam | MADS-box transcription factor MADS-MC | 13 | 85 | - | - | |
Cmu05g0860 | 231 | PRINTS | MADS domain signature | 3 | 23 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
Cmu05g0860 | 231 | PRINTS | MADS domain signature | 38 | 59 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
Cmu05g0860 | 231 | PRINTS | MADS domain signature | 23 | 38 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
Cmu05g0860 | 231 | Coils | Coil | 119 | 139 | - | - | |
Cmu05g0860 | 231 | MobiDBLite | consensus disorder prediction | 167 | 190 | - | - | |
Cmu05g0860 | 231 | Coils | Coil | 151 | 171 | - | - | |
Cmu05g0860 | 231 | Pfam | SRF-type transcription factor (DNA-binding and dimerisation domain) | 10 | 57 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
Cmu05g0860 | 231 | MobiDBLite | consensus disorder prediction | 167 | 231 | - | - | |
Cmu05g0860 | 231 | ProSitePatterns | MADS-box domain signature. | 3 | 57 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
Cmu05g0860 | 231 | Gene3D | - | 13 | 94 | IPR036879 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
Cmu05g0860 | 231 | SUPERFAMILY | SRF-like | 2 | 85 | IPR036879 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
Cmu05g0860 | 231 | CDD | MADS_MEF2_like | 2 | 78 | IPR033896 | GO:0000977(InterPro)|GO:0045944(InterPro) | |
Cmu05g0860 | 231 | ProSiteProfiles | MADS-box domain profile. | 1 | 61 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
Cmu05g0860 | 231 | PANTHER | SERUM RESPONSE FACTOR HOMOLOG | 1 | 186 | IPR050142 | GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER) | |
Cmu05g0860 | 231 | ProSiteProfiles | K-box domain profile. | 85 | 175 | IPR002487 | GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro) | |
Cmu05g0860 | 231 | SMART | madsneu2 | 1 | 60 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
Cmu05g0860 | 231 | Pfam | K-box region | 89 | 170 | IPR002487 | GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cmu05g0860 | Cmu-Chr5:7775896 | Cmu07g1575 | Cmu-Chr7:30913945 | 1.60E-42 | dispersed | |
Cmu05g0860 | Cmu-Chr5:7775896 | Cmu05g0867 | Cmu-Chr5:7895124 | 1.10E-30 | proximal | |
Cmu05g0860 | Cmu-Chr5:7775896 | Cmu06g0022 | Cmu-Chr6:250391 | 3.90E-52 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
6149 | PF01486 | K-box | 9.00E-24 | No_clan | Cmu | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cmu05g0860 | K09264 | - | csv:101212022 | 372.859 |