Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu05g0860 ATGGGAAGGGGAAAAGTAGTGCTTGAGAGAATAGAGAACAAAGTGAATCGTCAAGTTACCTTCTCAAAACGAAGAAATGGGTTATTGAAGAAGGCCTGTGAACTCTCTGTGCTCTGTGATGTTGATGTTGCTCTCATCATTTTCTCTAGTCGTGGAAAGCTCTTTGAATTTGGCAGCACTGACATGAACAAGATCCTTGAGAGATATCACCAGCGATGTTACAGCTCTGGATCAAGCACCAATCTTGATGAGAGTGACATACAGATAGAGGAAGTGTCAAAGCTGAGAGCCAAATATGAATCTCTTCAGCGTTCCCATAGGAACTTTCTTGGAGAAGAACTTGAACCACTGAACCTAAAAGAGTTGCATAATCTTGAGAAACAGTTGGACAAAACTCTTTCACACGCTAGACAGCGGAAGGCTGAGATAATGCTCCAAAAATTAGCAGACTTACGCAAAATGGAGCAGGACCTTGGAGATCAAAATACTCAGCTCAAGTCAAAGCTGGAAGAAGAACAACAATGTATGCAAGAAAAGGAAGGTGGCGAAGAAGATCATCCAATGAATTACGAAGTTGTGGGAGCTGACCCAAACATGAACACCACGAGGTACTTTGATCCCCAAGAAGAAGAAGAAGAGGGCAGGGCCATGATGGAAGCTGGGAATAATGACTTAATCCCAGATTGGCTACTTTGA 696 42.82 MGRGKVVLERIENKVNRQVTFSKRRNGLLKKACELSVLCDVDVALIIFSSRGKLFEFGSTDMNKILERYHQRCYSSGSSTNLDESDIQIEEVSKLRAKYESLQRSHRNFLGEELEPLNLKELHNLEKQLDKTLSHARQRKAEIMLQKLADLRKMEQDLGDQNTQLKSKLEEEQQCMQEKEGGEEDHPMNYEVVGADPNMNTTRYFDPQEEEEEGRAMMEAGNNDLIPDWLL 231
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 7775896 7784418 - CmPI595203_05g008600.1 Cmu05g0860 415774
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu05g0860 231 FunFam MADS-box transcription factor MADS-MC 13 85 - -
Cmu05g0860 231 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cmu05g0860 231 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cmu05g0860 231 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cmu05g0860 231 Coils Coil 119 139 - -
Cmu05g0860 231 MobiDBLite consensus disorder prediction 167 190 - -
Cmu05g0860 231 Coils Coil 151 171 - -
Cmu05g0860 231 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cmu05g0860 231 MobiDBLite consensus disorder prediction 167 231 - -
Cmu05g0860 231 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cmu05g0860 231 Gene3D - 13 94 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
Cmu05g0860 231 SUPERFAMILY SRF-like 2 85 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
Cmu05g0860 231 CDD MADS_MEF2_like 2 78 IPR033896 GO:0000977(InterPro)|GO:0045944(InterPro)
Cmu05g0860 231 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cmu05g0860 231 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 186 IPR050142 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER)
Cmu05g0860 231 ProSiteProfiles K-box domain profile. 85 175 IPR002487 GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
Cmu05g0860 231 SMART madsneu2 1 60 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cmu05g0860 231 Pfam K-box region 89 170 IPR002487 GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu05g0860 Cmu-Chr5:7775896 Cmu07g1575 Cmu-Chr7:30913945 1.60E-42 dispersed
Cmu05g0860 Cmu-Chr5:7775896 Cmu05g0867 Cmu-Chr5:7895124 1.10E-30 proximal
Cmu05g0860 Cmu-Chr5:7775896 Cmu06g0022 Cmu-Chr6:250391 3.90E-52 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
6149 PF01486 K-box 9.00E-24 No_clan Cmu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu05g0860 K09264 - csv:101212022 372.859