Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu05g0867 ATGGTGAGAGGAAAAGTAGAAATGAAAAGGATAGAAAATGCAACAAGTCGACAGGTAACATTCTCAAAGCGTAGAAATGGACTATTGAAGAAGGCGTATGAACTATCTGTGCTGTGTGATGCTGAAGTTGCAGTCATCATTTTCTCACAAAAAGGCCGTCTCTATGAATTCGCAAGCTCTGAGATGCCAAGGATTGTAGAGCGCTATCGCAAATGTTCAAGAGATGGGAAAAACAGTACCAGATTTGACAGACAACTCCAATTGCAGCAATTAAGACTTGAAGCTGAAAGCATAAATAAGAAGATGGAGCTGCTGCAACTTTCTCAAAGGAAGCTGTTGGGATATGGACTGGATTCTTGTTCCCATGATGAACTTCAAGTACTTGATGCTCAGCTTCAGCGAAGCCTCTTTCAAATTAGGGCCAGAAAGGCTCAGCTGTACAAGGAGCAGATACAACAACTACAAGAAAAGGAAAGACTCCTTTCAGAAGAAAACAGGAAATTGTCTTTAAAGGCCGCAGCTGACGATTGGGCCGCCACGCACGGCTGCCGGAGGAGCTCAAGTTCGGTAGTCGACACCCAATTGGCAATTTGA 594 43.77 MVRGKVEMKRIENATSRQVTFSKRRNGLLKKAYELSVLCDAEVAVIIFSQKGRLYEFASSEMPRIVERYRKCSRDGKNSTRFDRQLQLQQLRLEAESINKKMELLQLSQRKLLGYGLDSCSHDELQVLDAQLQRSLFQIRARKAQLYKEQIQQLQEKERLLSEENRKLSLKAAADDWAATHGCRRSSSSVVDTQLAI 197
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 7895124 7903513 - CmPI595203_05g008670.1 Cmu05g0867 415781
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu05g0867 197 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 172 IPR050142 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER)
Cmu05g0867 197 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cmu05g0867 197 FunFam MADS-box transcription factor MADS-MC 13 85 - -
Cmu05g0867 197 Pfam K-box region 86 171 IPR002487 GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
Cmu05g0867 197 SUPERFAMILY SRF-like 3 85 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
Cmu05g0867 197 Coils Coil 88 108 - -
Cmu05g0867 197 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cmu05g0867 197 Coils Coil 144 171 - -
Cmu05g0867 197 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cmu05g0867 197 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cmu05g0867 197 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cmu05g0867 197 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cmu05g0867 197 ProSiteProfiles K-box domain profile. 88 178 IPR002487 GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
Cmu05g0867 197 Gene3D - 14 92 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
Cmu05g0867 197 SMART madsneu2 1 60 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cmu05g0867 197 CDD MADS_MEF2_like 3 78 IPR033896 GO:0000977(InterPro)|GO:0045944(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu05g0867 Cmu-Chr5:7895124 Cmu06g0023 Cmu-Chr6:256313 2.30E-45 dispersed
Cmu05g0860 Cmu-Chr5:7775896 Cmu05g0867 Cmu-Chr5:7895124 1.10E-30 proximal
Cmu01g0516 Cmu-Chr1:5394920 Cmu05g0867 Cmu-Chr5:7895124 3.90E-48 transposed
Cmu01g0312 Cmu-Chr1:3215247 Cmu05g0867 Cmu-Chr5:7895124 3.40E-44 wgd
Cmu05g0216 Cmu-Chr5:1805931 Cmu05g0867 Cmu-Chr5:7895124 1.90E-25 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
6150 PF01486 K-box 3.20E-21 No_clan Cmu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu05g0867 - - - 0.0