Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu05g0878 ATGGACTCTTTTTCAACTTTTTATGAAGACTACTTCTCCAGTTCCGAGAGTAGTAATTCCCGCCGCCCTATTTTTTCCGATGAGGATATTATGTTGGCGGCCAGCAATCCCAAGAAGAGGGCCGGCAGGAAGAAGTTTAAGGAAACAAGGCATCCGGTCTACAGAGGGGTCAGGAGGAGAAACTCCGGCAAGTGGGTCTGTGAAGTGAGAGAGCCCAATAAGAAGTCAAGGATTTGGCTTGGCACTTTTCCGACGGCGGAGATGGCGGCTCGGGCTCACGACGTCGCTGCCATCGCCCTTAGAGGTCTCACTGCTTGTCTCAATTTCGCCGATTCTGCGTGGCGGCTGCCTGTGCCGGCGTCTGCTGACGCCAGAGATATCCGGAAGGCGGCAGCAGAGGCGGCGGAGGCATTCCGACCGGTTGAGTCATGTGGGTCTTCTGCTGACGACTCAAGGACGGAAAATGAGATAACGGCGGAGACGACGCAGGAAAACGTGAATTACATGGATGAGGAGGCAGTTTTTGGGATGCCAGGTTTTTTGGAAGATATGGCTGCGGGGATGATGTTGCCTCCACCTCAGCATTTTCGTGATGACATGGATTTTTATTCTGACGTGTCATTATGGAGCTATTAA 636 52.36 MDSFSTFYEDYFSSSESSNSRRPIFSDEDIMLAASNPKKRAGRKKFKETRHPVYRGVRRRNSGKWVCEVREPNKKSRIWLGTFPTAEMAARAHDVAAIALRGLTACLNFADSAWRLPVPASADARDIRKAAAEAAEAFRPVESCGSSADDSRTENEITAETTQENVNYMDEEAVFGMPGFLEDMAAGMMLPPPQHFRDDMDFYSDVSLWSY 211
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 7975740 7976375 - CmPI595203_05g008780.1 Cmu05g0878 415792
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu05g0878 211 SMART rav1_2 53 116 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cmu05g0878 211 SUPERFAMILY DNA-binding domain 53 112 IPR016177 GO:0003677(InterPro)
Cmu05g0878 211 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1D 11 211 IPR045277 GO:0003700(InterPro)
Cmu05g0878 211 CDD AP2 54 112 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cmu05g0878 211 ProSiteProfiles AP2/ERF domain profile. 53 110 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cmu05g0878 211 FunFam Ethylene-responsive transcription factor 2 52 111 - -
Cmu05g0878 211 Gene3D AP2/ERF domain 53 111 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Cmu05g0878 211 PRINTS Ethylene responsive element binding protein signature 54 65 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cmu05g0878 211 PRINTS Ethylene responsive element binding protein signature 76 92 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cmu05g0878 211 Pfam AP2 domain 52 102 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu05g0878 Cmu-Chr5:7975740 Cmu10g2650 Cmu-Chr10:33313386 1.80E-32 dispersed
Cmu05g0878 Cmu-Chr5:7975740 Cmu05g0879 Cmu-Chr5:7995791 4.80E-25 tandem
Cmu01g0542 Cmu-Chr1:5743515 Cmu05g0878 Cmu-Chr5:7975740 5.10E-64 transposed
Cmu01g0298 Cmu-Chr1:3042168 Cmu05g0878 Cmu-Chr5:7975740 2.20E-32 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
6152 PF00847 AP2 1.30E-15 CL0081 Cmu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu05g0878 - - - 0.0