Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu05g0879 ATGTCTGATAATAATAATAATTCTCCCGGCCGCCCTGGTCGCCACCACCTTTTCCGGGGTATCCGTTCCCGAAGTGGCAAATGGGTCTCTGAAATTCGCGAGCCACGTAAGACCACTCGCATTTGGCTCGGTACATACCCCACTCCCGAAATGGCCGCCGCCGCCTACGACGTCGCCGCCCTCTCTCTCAAAGGCCCTCATGCCTCCCTTAATTTCCCCGACTCTCGTAATTCCTATCGCATTCCTCTTTCCACTTCCGCTTCTGACATTCGCGCCGCCGCCGCCATTGCCGCCGCCTCCAGAAACCTCAATAACAATAACCCTGGCCAGGCTTCTCCTTCTGCTGCTACTGCTGCTGATTCTTCACACACCGACGGCGGTGGGCCCTCCTCCCATGCCACGGCGGATTCTTCCGGCAAGTTTGTGGACGAGGAAGAGTTACTGAACATGCCCAATTTACTGGCGGACATGGCGGAGGGAATGCTGGTGAGTCCCCCTCGGATGAAATCGCCGTCGTCCGATGACTCTCCCACCCATTCTTCTCAAGGAGATGATGGATTATGGAGTTACTCCAAATAA 579 55.79 MSDNNNNSPGRPGRHHLFRGIRSRSGKWVSEIREPRKTTRIWLGTYPTPEMAAAAYDVAALSLKGPHASLNFPDSRNSYRIPLSTSASDIRAAAAIAAASRNLNNNNPGQASPSAATAADSSHTDGGGPSSHATADSSGKFVDEEELLNMPNLLADMAEGMLVSPPRMKSPSSDDSPTHSSQGDDGLWSYSK 192
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 7995791 7996369 - CmPI595203_05g008790.1 Cmu05g0879 415793
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu05g0879 192 Gene3D AP2/ERF domain 17 75 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Cmu05g0879 192 SMART rav1_2 17 79 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cmu05g0879 192 CDD AP2 18 75 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cmu05g0879 192 MobiDBLite consensus disorder prediction 103 137 - -
Cmu05g0879 192 MobiDBLite consensus disorder prediction 169 192 - -
Cmu05g0879 192 Pfam AP2 domain 19 65 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cmu05g0879 192 ProSiteProfiles AP2/ERF domain profile. 17 73 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cmu05g0879 192 FunFam Ethylene-responsive transcription factor 2 16 75 - -
Cmu05g0879 192 SUPERFAMILY DNA-binding domain 18 75 IPR016177 GO:0003677(InterPro)
Cmu05g0879 192 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1D 14 190 IPR045277 GO:0003700(InterPro)
Cmu05g0879 192 MobiDBLite consensus disorder prediction 103 192 - -
Cmu05g0879 192 PRINTS Ethylene responsive element binding protein signature 18 29 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cmu05g0879 192 PRINTS Ethylene responsive element binding protein signature 55 75 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu01g0298 Cmu-Chr1:3042168 Cmu05g0879 Cmu-Chr5:7995791 8.20E-40 dispersed
Cmu05g0879 Cmu-Chr5:7995791 Cmu10g1201 Cmu-Chr10:4778255 9.80E-41 dispersed
Cmu05g0878 Cmu-Chr5:7975740 Cmu05g0879 Cmu-Chr5:7995791 4.80E-25 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
6153 PF00847 AP2 3.00E-10 CL0081 Cmu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu05g0879 - - - 0.0