Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu05g0888 ATGGCTTCAAAACAATCTTCAAAACAATCCATTATCTCCCCTTGGAGAAAAATCTACACCATTTTTCTAATCCTCTTCCTCTGTTTTTTCTCTTACTTTATCGGCCGCCGCCAACAACAACCCTCCGCCGCCCCCCTCCGTTGCACCACCATCACTGCAAAACACAACAACTATTTTCCGGCATGTGGGGTGGAGTACAGCGAGTACACGCCATGTGAGGACACGAAAAGGTCTTTGAAGTTCAGCAGAGACAGGCTGATTTACAGAGAGAGGCACTGCCCGGAAAAGGAAGAGATTTTGAAGTGCCGGATTCCTCCGCCGCCTGGGTATCGGAATCCGTTCTCGTGGCCGGTGAGTAGAGATTTGGCGTGGTACGTGAATGTGCCGCATAAGCATCTGACGGTGGAGAAAGCTGTGCAGAATTGGATTAGATATGAAGGCGATACGTTTAGATTTCCGGGCGGAGGGACGATGTTCCCTGACGGAGCTGATGCTTACATTGATAATATTGGGAAATTAATTAATCTCAAAGATGGGTCCATCAGAACCGCCATTGATACTGGCTGTGGGGTGGGAAGTTGGGGAGCTTATCTACTGTCGAGGGACATTGTAACGATGTCGTTTGCGCCAAGGGATACTCATGAAGCTCAAGTTCAGTTTGCTTTGGAGAGAGGAGTTCCTGCACTCATTGGCATTCTTGCCTCTAAGAGACTTCCTTATCCTTCAAATGCCTTTGACATGGCTCATTGCTCTCGCTGCCTTATCCCTTGGCCACAATATGATGGGATCCTCCTCATTGAAGTCGATCGAGTTCTACGCCCCGGCGGATACTGGATTTTATCAGGCCCTCCAATCAACTGGAAGACGCACTGGAAAGGTTGGGAAAGAACAAAGGAAGATTTGAATTCTGAACAGCTTGCCATTGAAAAGGTAGCCAAAAGCCTCTGTTGGACTAAACTAGTGGAAGATGGTGATATAGCCATTTGGCAAAAGCCTATCAATCACTTCAACTGCAAACTCAACCGCAAGATCACCAAGAATCCTCCTTTCTGTAATGCCCAAGATCCTGACAGAGCTTGGTATACGGATATGCAAGATTGTTTAACGCACTTGCCTGAAGTTTCAAACAGTAAGGAAATTGCAGGAGGGAAGTTGGCAAGATGGCCTGAAAGGCTAAATGCAATCCCACATAGGATTAGCAGAGGAACTGTGAAAGGGGTGACAGAAGAAACTTTCATTCATGATTCTGAACTATGGAAGAAGAGGTTGTCATATTACAGAACCATCAACAATCAGCTGAGTAAGCCCGGACGGTACCGCAATTTCTTGGACATGAATGCTTTTTTGGGTGGATTTGCTGCTGCTCTGGTTGATGATCCAGTTTGGGTGATGAACGTGGTCCCTGTGGATGTCAAAGTCAATACGCTCGGAGTCATATACGATAGGGGTTTAATCGGCTCATACCAAGATTGGTGTGAGGCGATGTCTACTTATCCAAGAACTTATGACTTCATTCATGCTGATTCAGTTTTTAGCCTCTACGAGAATAGATGTGAAATGGAAGATATTCTCCTTGAAATGGACAGAATTCTGAGGCCAGAAGGAAGCGTAATATTCCGAGAGAACATCGACATTTTGGCGAAAATCAAGACGATAACCAATAAGTTGAATTGGAGCAGTCAAATTGTGGATCATGAAGATGGACCTTATCATATGGAAAAACTTCTATTTGCAGTCAAAAACTATTGGACAGCACCTCCTGAACTTTCTGATCAACAACAAGGATCTAAAGCAAATTAA 1800 45.06 MASKQSSKQSIISPWRKIYTIFLILFLCFFSYFIGRRQQQPSAAPLRCTTITAKHNNYFPACGVEYSEYTPCEDTKRSLKFSRDRLIYRERHCPEKEEILKCRIPPPPGYRNPFSWPVSRDLAWYVNVPHKHLTVEKAVQNWIRYEGDTFRFPGGGTMFPDGADAYIDNIGKLINLKDGSIRTAIDTGCGVGSWGAYLLSRDIVTMSFAPRDTHEAQVQFALERGVPALIGILASKRLPYPSNAFDMAHCSRCLIPWPQYDGILLIEVDRVLRPGGYWILSGPPINWKTHWKGWERTKEDLNSEQLAIEKVAKSLCWTKLVEDGDIAIWQKPINHFNCKLNRKITKNPPFCNAQDPDRAWYTDMQDCLTHLPEVSNSKEIAGGKLARWPERLNAIPHRISRGTVKGVTEETFIHDSELWKKRLSYYRTINNQLSKPGRYRNFLDMNAFLGGFAAALVDDPVWVMNVVPVDVKVNTLGVIYDRGLIGSYQDWCEAMSTYPRTYDFIHADSVFSLYENRCEMEDILLEMDRILRPEGSVIFRENIDILAKIKTITNKLNWSSQIVDHEDGPYHMEKLLFAVKNYWTAPPELSDQQQGSKAN 599
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 8098873 8104249 + CmPI595203_05g008880.1 Cmu05g0888 415802

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmu05g0888 599 FunFam Putative methyltransferase PMT15 137 331 - -
Cmu05g0888 599 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 90 294 IPR029063 -
Cmu05g0888 599 PANTHER SAM-DEPENDENT METHYLTRANSFERASE 52 583 IPR004159 GO:0005737(PANTHER)|GO:0005768(PANTHER)|GO:0005802(PANTHER)|GO:0008168(InterPro)
Cmu05g0888 599 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 344 575 IPR029063 -
Cmu05g0888 599 CDD AdoMet_MTases 183 277 - -
Cmu05g0888 599 Pfam Putative S-adenosyl-L-methionine-dependent methyltransferase 68 580 IPR004159 GO:0008168(InterPro)
Cmu05g0888 599 Gene3D Vaccinia Virus protein VP39 155 319 IPR029063 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu05g0888 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu05g0204 Cmu-Chr5:1714272 Cmu05g0888 Cmu-Chr5:8098873 2.80E-246 dispersed
Cmu05g0888 Cmu-Chr5:8098873 Cmu11g0671 Cmu-Chr11:7386751 2.10E-129 dispersed
Cmu01g0118 Cmu-Chr1:1045367 Cmu05g0888 Cmu-Chr5:8098873 1.10E-223 transposed
Cmu07g0278 Cmu-Chr7:2771625 Cmu05g0888 Cmu-Chr5:8098873 5.40E-151 transposed
Cmu10g1041 Cmu-Chr10:2472017 Cmu05g0888 Cmu-Chr5:8098873 1.10E-197 transposed
Cmu11g0795 Cmu-Chr11:9011526 Cmu05g0888 Cmu-Chr5:8098873 5.60E-199 transposed
Cmu05g0201 Cmu-Chr5:1695891 Cmu05g0888 Cmu-Chr5:8098873 3.60E-142 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g607 . . . . . . . Bma14g02088 Cmo16g00150 Cmo18g01254 . . . . Sed02g1606 . Cpe14g00121 Bhi01g01355 Tan01g0280 Cmetu06g0945 . Hepe07g0181 Mch10g0177 . . . . . . . . . . . . Lsi05g01255 . . Cme06g00973 . . . . . . . . . . . Cma16g00143 Cma18g01231 Car16g00124 Car18g01135 . . . . . . . . . Cla05g00857 Cam05g0943 Cec05g0948 Cco05g0948 Clacu05g0930 Cmu05g0888 Cre05g0973 . Csa03g01687 Chy06g00920 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002128 2 2 2 2 2 2 3 2 2 2 2 2 3 2 2 4 2 3 1 2 2 2 2 2 2 2 2 3 2 2 65