Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu05g0894 ATGCCTAGTGGTGCAATTACTGACCAGAGCTTTCTAGCTTATTCGATTCCCAGTTCAATGCCCAGCTCCTCTGAATTCTCCAGTTCCTTAAGGAAAATGGACGGTTATGGAGAAGTGTGTCTGCTTGGAGACGGCTTTGATCCGACTGGAATTGTGAGGATAAGGGAAGATGGATATGATAGTAGATCAGGCAGTGACAACATCGATGGCGCTGTATCTGGGGATGATCAAGATGCTAATGAAGAACAACCACCAAAAAGGAAGAAGTACCATAGGCATACTCCCCATCAGATCCAAGAGCTTGAGATTTTCTTTAAGGAGTGTCCTCATCCTGATGATAAACAAAGAAGTGAGCTCAGTAGGAGGCTTGGTTTGGAGACAAAGCAAGTGAAGTTTTGGTTTCAAAATCGTCGAACACAGATGAAGACGCAAATAGAACGACATGAGAATGCAATTCTTAAGCAAGAAAACGATAAGCTCCGAGCCGAGAATAGTGTGATGAAGGATGCTATTTCTGACCCAACGTGTAATACTTGTGGTGGCCCTTCAATTCCTGTTCATTTATCATTTGAAGAACACCAGCTTAGGATTGAGAATGCCAGATTAAGAGATGAACTGCACCGGTTATATGCAGTCACCAACAAGTTCTTGGGCTGGCCGGTTGTGCCCTTTGCCAATCATGGCTCTTCACCAAGTTCTGACTCTTGCTTGGAACTTTCAGTAGGAAGAAATGGAATTGGAAATTTGAGTACCGTTTCTGATTCAATGGGGCTTAATTTGGGAAACGAACTTTTCAATGCTGGCCCTGTGATGCCTGTTAGTAAGCCTGAAATAGGCATGCTAAGTAATGATATACCACTTGAGAGAACAATATATGTGGATCTTGCTTTGGCAGCCATGAATGAATTGGTTAAGATGGCTCAAATGGACGGTCCCCTTTGGATCAGAAGTCGGGATGGCAAAGAGACATTGAACCTTGATGAATATTCAAGGACATTTCCTTCTTCGGCTGGCATGAAGCACAGTAATTGGACAACAGAGGCGACCAGAGATACTACAATGGTCATCATCAACAGCTTGGCACTTGTCGAGACATTGATGGACGCAAACCGATGGGCAGAAATGTTTCCTTGCTTGATTGCTCGAGCTACTACAATTGATGTGATATCAAGTGGCATGGGTGGAACTAGAAATGGTGCATTACAATTGATGCATGCTGAACTCCGAGTACTTTCCCCACTCGTTCCTGTTCGTACACTTAAGTTCCTCCGCTTCTGCAAGCAGCACGCTAATGGTCTATGGGCTGTAGTTGATGTTTCCATTGGAGAAGGTTCAAATTCAAACTCATTTTTTGGTTGCAGGAGGCTCCCTTCAGGCTGTGTTGTGCAAGATATGCCTAATGGTTTCTCCAAGGTTACATGGGTGGAACATACAGAATATGATGAGACTGTTATCCACCAGCTTTACCGGCAGTTAATTAGTTCGGGCAGCGGCTTTGGTTCACAACGGTGGCTTGCTACCCTTCAAAGACAATGCGACTGTTTGGCAATTCTTATGTCTTCTACTATCCCCTCCGAAGATCCTGCAGGAATATCTCCATGCGGTAGGAGAAGTATGTTGAAGCTATCGCAGCGTATGGTGGATAACTTCTGTTCTGGGGTTTGCAGTTCAACTTTGCATAAGTGGGACAAGCTCGTTGTAGGCAATATTAGTGAAGATGTAAAAGTGATGGCTAGAAAAAGCATCAACGATCCTGGCGAGCCACCTGGTATCGTGTTGAGTGCGGCAACTTCGGTTTGGATGCCAGTAACTCAGCAGAGGTTGTTTGCATTCTTGCAAGATGAGTGCTTACGGAGTGAGTGGGATATTTTATCCAACAGCCGGCCAATGCTAGAGATGCTCCGCATCTCAAAAGGCCAAGGACCGGATAACCGTGTTTCTCTCCTGCGTGCTAATCCCATGAACGCTAATGAGAGCACAATGTTCATATTGCAAGAGACTTGGACTGATGTATCAGGCTCGCTGGTTGTTTACGCTCCAGTTGACACTTCATCGGTTAATTTGGTGATGCGCGGAGGAGATTCTGCTTATGTATCACTATTACCATCAGGATTTGCAATTCTCCCCAATGGTCCATCCAACTATGCTTGCACAAACGACCAAGACGGATCTGTCAAGTCAGTCGTTAACAGTGGCCATGGTGGTGGATGTCTGCTCACAGTTGCATTCCAGATTTTGGTGAATAGCCTTCCAACCGCCAAACTCACCGTCGAGTCAGTTGAGACAGTTAACAATCTCATTTCTTGCACCATCCAAAAGATCAAAACTGCCCTTCAAATATCGTAA 2346 44.93 MPSGAITDQSFLAYSIPSSMPSSSEFSSSLRKMDGYGEVCLLGDGFDPTGIVRIREDGYDSRSGSDNIDGAVSGDDQDANEEQPPKRKKYHRHTPHQIQELEIFFKECPHPDDKQRSELSRRLGLETKQVKFWFQNRRTQMKTQIERHENAILKQENDKLRAENSVMKDAISDPTCNTCGGPSIPVHLSFEEHQLRIENARLRDELHRLYAVTNKFLGWPVVPFANHGSSPSSDSCLELSVGRNGIGNLSTVSDSMGLNLGNELFNAGPVMPVSKPEIGMLSNDIPLERTIYVDLALAAMNELVKMAQMDGPLWIRSRDGKETLNLDEYSRTFPSSAGMKHSNWTTEATRDTTMVIINSLALVETLMDANRWAEMFPCLIARATTIDVISSGMGGTRNGALQLMHAELRVLSPLVPVRTLKFLRFCKQHANGLWAVVDVSIGEGSNSNSFFGCRRLPSGCVVQDMPNGFSKVTWVEHTEYDETVIHQLYRQLISSGSGFGSQRWLATLQRQCDCLAILMSSTIPSEDPAGISPCGRRSMLKLSQRMVDNFCSGVCSSTLHKWDKLVVGNISEDVKVMARKSINDPGEPPGIVLSAATSVWMPVTQQRLFAFLQDECLRSEWDILSNSRPMLEMLRISKGQGPDNRVSLLRANPMNANESTMFILQETWTDVSGSLVVYAPVDTSSVNLVMRGGDSAYVSLLPSGFAILPNGPSNYACTNDQDGSVKSVVNSGHGGGCLLTVAFQILVNSLPTAKLTVESVETVNNLISCTIQKIKTALQIS 781
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
5 8130458 8134998 + CmPI595203_05g008940.1 Cmu05g0894 415808
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Cmu05g0894 781 MobiDBLite consensus disorder prediction 57 94 - -
Cmu05g0894 781 Coils Coil 138 170 - -
Cmu05g0894 781 Gene3D - 73 160 - -
Cmu05g0894 781 ProSiteProfiles START domain profile. 285 517 IPR002913 GO:0008289(InterPro)
Cmu05g0894 781 CDD START_ArGLABRA2_like 294 512 - -
Cmu05g0894 781 SUPERFAMILY Homeodomain-like 71 144 IPR009057 -
Cmu05g0894 781 ProSiteProfiles 'Homeobox' domain profile. 84 144 IPR001356 GO:0003677(InterPro)
Cmu05g0894 781 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 74 779 IPR042160 -
Cmu05g0894 781 SMART HOX_1 86 148 IPR001356 GO:0003677(InterPro)
Cmu05g0894 781 ProSitePatterns 'Homeobox' domain signature. 119 142 IPR017970 GO:0000981(InterPro)|GO:0006355(InterPro)
Cmu05g0894 781 FunFam Homeobox-leucine zipper protein HDG1 73 160 - -
Cmu05g0894 781 CDD homeodomain 87 144 IPR001356 GO:0003677(InterPro)
Cmu05g0894 781 SUPERFAMILY Bet v1-like 542 775 - -
Cmu05g0894 781 FunFam Homeobox-leucine zipper protein GLABRA 2 294 513 - -
Cmu05g0894 781 Pfam Homeodomain 87 142 IPR001356 GO:0003677(InterPro)
Cmu05g0894 781 SMART START_1 294 514 IPR002913 GO:0008289(InterPro)
Cmu05g0894 781 Pfam START domain 295 513 IPR002913 GO:0008289(InterPro)
Cmu05g0894 781 SUPERFAMILY Bet v1-like 286 514 - -
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu05g0894 Cmu-Chr5:8130458 Cmu09g1115 Cmu-Chr9:11577959 3.60E-150 dispersed
Cmu05g0200 Cmu-Chr5:1686371 Cmu05g0894 Cmu-Chr5:8130458 5.20E-215 wgd
Cmu05g0894 Cmu-Chr5:8130458 Cmu06g0005 Cmu-Chr6:97544 4.00E-266 wgd
       

Transcription factors information


Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
6156 PF01852 START 6.80E-48 CL0209 Cmu TF
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu05g0894 K09338 - csv:101218216 1468.37