Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu05g0897 ATGTATCTGCAAATTCTTTCAACATACAGGAATTTGCTTCTTCATGTTGGTCTCTCTCTCTCGCTTTCTGTTTTCATCATCTTCTTCAAAATCCCAACCCTTTTCCTTCATGGCATATTCACCTACATCCACCCTGATAACACCAACAGCGGCGTCCGAGCCGCGATTAGAAGACCTGACGGCTCTAACTCCGGTTCTGGACTAGAGGGGTACCGAAACTTGTCCTCAACTGGTGCCGCTGAGATCAGGAAAAGAACAAAGTCGAAGGACAAGGTTGAGTTTGACGAAAGCAAGGCGCAGATCTTCAGGTTAAAGCTGGATGAAAATCATCTGCAAACGCGGATCTATTTCAAAGAATACAGAGATGGTTTCACTTTTTCATTTGTGGGTATTTCTTGTTTACTGCTGCAAATTTTCTTGGGTGCATCAAAAAATTCTGGGGTTTGGGGAAATGGGATTTTTGTTCCTCTTCTGTTTGCGATCTTTGCTGGATGCAAGCTGTTTGTATCTCTCACAAAGGTTGCTTTGGAGAAATCTGCGTCCAGGACGTTGGATAGGCAATTGAGTTTGCTCTTTGGAGTTTCTGGGTTTCTTTTTGGGCTTTTAACTTGTTCTGCTTTTAGCCCTCTTATATTGGATTTTGATCTTGGTGAAATTGGTGGTTCGGGGGCTTGTTTCGTTTCTATCTTAATGGCCTGTTGTGCTGGGTTTTTGTTTATACCTGCAACCAAAATCGCTCGATCATTTTGGCTTGGAACTGATCAAATTAGATGCAATTTGGATATGGTTTATTGTGGATGGTTTTCTCGGATGGTTTTGTATTCAAGTCAGGTAGTCATGGCTTTCACCACCTTGCTTTGGGTTAACCCATTAGCTGAAATTTTCATTAACAAGAACATCGGCGAAGGTACAATTGACCGTATGTCTAGTGAAATCCGAAATGCTGACAGATTGGTCGGAAGTATAGGATTCTCAAAGGCAGATTTCATCAAGCTTAGGCTCTGGTGTTTGTCACTGTCGGGTTTCTTGCAAATCATCGCAGTAAGGCAAAACTTGCAAATGTATCTGAACGAAGCTTTGTTATCTTGGTATCAAAGATTGCATGCTGGGAAAGTTCCTGACTTGGATTTCAGTAGAGCAAAGGTTTTTCTGCACAATCACTACTTATGTGTGTCTGCTTTGCAGTTCTTTGCTCCACCAGCCTTAGTTTTTCTTTTTGTTGGGTTATCGCAAATTGGTATTAACTCTTTGGAAAATACCAATTTGGCTGCTATGGCTTTTGTTGTTATGGTACCTTATTTGCATTATGACTTCTCGGTGGCGTCTTCTTCAATCTTTGCCAGTTCAGGGGAGAGAGAAAAGTCTCAGTCATGCAGACTAGGAAGGTTAACGATTTGTATCCTCATTGACCTTTTGATTGGAAATTTTGGCTTTGGGCATCAATTCCCAAAGTGTCTTGGTCTAAGAGATGAAAGGGGTGAAGATGATGATGTAGGAGCAGCTTTGTGGCCAAAGATTCCAGGAGAAGGGCATATTTTGTGGGTCAATGCAGTAAAGGCTTTCGACTTGGTGAATATGAATGGAGAGAATTTGAGGAATCATCTTCCCTTCCCATCACTTGGAAGCAAAAAAATCTTGTCTTCCTCCTTCTTCCACGAACCTTCTAGAATTGAAATTCCAGTGCCGTACCTGGAAAATTCTCCCAACTATTCCTCTAAAATTCTCATACCGAAGCTTTCCTTAGGGTTTGGGAGTTGCGACCGATCATTCGGGGATCTGATTTCGTTGATTCTTGGGGTTCCTCTCATGGAGGACCCGACCGCCAAGCAGAAGCCTACTGCAGGCGATTCACAGAGATCTGTGCCCACTCCTTTCTTGACGAAAACTTATCAGCTCGTTGACGACGAGACAATTGACCATGTCATTTCATGGAACGACGACGGATCTACCTTCATCGTCTGGAACACCATGGCTTTCGCCAGGGATTTGCTCCCCAAGTATTTCAAGCACAATAACTTCACCAGCTTTCTCCGTCAGCTCAATACTTATGGATTTAGAAAGGTTGTATCGGATCGTTGGGAGTTTGCGAACGAGTGCTTTCGTAAGGGCAAGAAACAGCTTCTTTGTGAGATTCAGCGTCGGAAATTGGCCGCTCCGGTGCCGTCCACTGCGACGATTCCGTCTGCGCAACTATTAACATTGACGGGGAATTCTTCCGGTGAAGAACAAGTGATTTCGTCCGATGGGACTCCGACGACAGCTCTTGCAGAGCTGATCGATGAGAACGATCGGCTGAGAAAAGAGAAAGTTCAGCTTACGGAACAATTGGTTGAGGTGAAATCTCTGTGCAACAATATCTTCTCGTTGATGTCGAGCTTCGTTGAAAGTCAGTTTAAGAGCAGTTTTAAAGTGAGAGAGAGCGTTTTAACATCCGCAAAATCGCTCGATCTTTTCCCGGTGAAGCGGGCTTCCGGTGAAGACGAAACGGCGGAGGCCGAGGAGGAGGAGACGAATCAGATCGGCGCGAAGCGACCGAGGGAATATAGGGAAGTGGCGACGGAGACGGCGGAGGATGATACTGCTTTGCGGCTTCAACCACCGGATAGATCGGAAGTCTTATCAGAGCGGATAAATTGTCAAAAAAAAGTTGATCAGAAAACGTGGCATAATCAGGTCCACTGA 2682 44.41 MYLQILSTYRNLLLHVGLSLSLSVFIIFFKIPTLFLHGIFTYIHPDNTNSGVRAAIRRPDGSNSGSGLEGYRNLSSTGAAEIRKRTKSKDKVEFDESKAQIFRLKLDENHLQTRIYFKEYRDGFTFSFVGISCLLLQIFLGASKNSGVWGNGIFVPLLFAIFAGCKLFVSLTKVALEKSASRTLDRQLSLLFGVSGFLFGLLTCSAFSPLILDFDLGEIGGSGACFVSILMACCAGFLFIPATKIARSFWLGTDQIRCNLDMVYCGWFSRMVLYSSQVVMAFTTLLWVNPLAEIFINKNIGEGTIDRMSSEIRNADRLVGSIGFSKADFIKLRLWCLSLSGFLQIIAVRQNLQMYLNEALLSWYQRLHAGKVPDLDFSRAKVFLHNHYLCVSALQFFAPPALVFLFVGLSQIGINSLENTNLAAMAFVVMVPYLHYDFSVASSSIFASSGEREKSQSCRLGRLTICILIDLLIGNFGFGHQFPKCLGLRDERGEDDDVGAALWPKIPGEGHILWVNAVKAFDLVNMNGENLRNHLPFPSLGSKKILSSSFFHEPSRIEIPVPYLENSPNYSSKILIPKLSLGFGSCDRSFGDLISLILGVPLMEDPTAKQKPTAGDSQRSVPTPFLTKTYQLVDDETIDHVISWNDDGSTFIVWNTMAFARDLLPKYFKHNNFTSFLRQLNTYGFRKVVSDRWEFANECFRKGKKQLLCEIQRRKLAAPVPSTATIPSAQLLTLTGNSSGEEQVISSDGTPTTALAELIDENDRLRKEKVQLTEQLVEVKSLCNNIFSLMSSFVESQFKSSFKVRESVLTSAKSLDLFPVKRASGEDETAEAEEEETNQIGAKRPREYREVATETAEDDTALRLQPPDRSEVLSERINCQKKVDQKTWHNQVH 893
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 8167680 8173101 - CmPI595203_05g008970.1 Cmu05g0897 415811

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmu05g0897 893 SMART hsfneu3 621 714 IPR000232 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cmu05g0897 893 MobiDBLite consensus disorder prediction 823 860 - -
Cmu05g0897 893 FunFam Heat stress transcription factor B-4 617 715 - -
Cmu05g0897 893 SUPERFAMILY Winged helix DNA-binding domain 622 714 IPR036390 -
Cmu05g0897 893 Coils Coil 755 782 - -
Cmu05g0897 893 PANTHER RE42071P 7 410 IPR019395 -
Cmu05g0897 893 Pfam HSF-type DNA-binding 625 714 IPR000232 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cmu05g0897 893 ProSitePatterns HSF-type DNA-binding domain signature. 664 688 IPR000232 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cmu05g0897 893 Gene3D - 617 715 IPR036388 -
Cmu05g0897 893 PRINTS Heat shock factor (HSF) domain signature 663 675 IPR000232 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cmu05g0897 893 PRINTS Heat shock factor (HSF) domain signature 625 648 IPR000232 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cmu05g0897 893 PRINTS Heat shock factor (HSF) domain signature 676 688 IPR000232 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cmu05g0897 893 MobiDBLite consensus disorder prediction 836 860 - -
Cmu05g0897 893 Pfam Predicted transmembrane protein 161AB 226 406 IPR019395 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu05g0897 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu05g0897 Cmu-Chr5:8167680 Cmu05g2061 Cmu-Chr5:30282651 8.80E-44 dispersed
Cmu01g2243 Cmu-Chr1:34806466 Cmu05g0897 Cmu-Chr5:8167680 9.50E-28 transposed
Cmu04g0415 Cmu-Chr4:13588164 Cmu05g0897 Cmu-Chr5:8167680 3.70E-37 transposed
Cmu01g0289 Cmu-Chr1:2956740 Cmu05g0897 Cmu-Chr5:8167680 5.00E-60 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g621 . . . Bda07g01857 . . . . . Cmo18g01260 . . . . . . . Bhi01g01342 . . . Hepe07g0172 . . . . . . . . . . . . . Lsi05g01244 . . Cme06g00982 . . . . . . . . . . . . Cma18g01238 . Car18g01141 . . . . . . . . . Cla05g00865 Cam05g0952 Cec05g0957 Cco05g0957 Clacu05g0939 Cmu05g0897 Cre05g0981 . Csa03g01696 Chy06g00931 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003583 2 2 0 1 1 1 3 1 1 2 1 1 3 2 2 4 1 2 2 1 2 2 2 2 1 1 1 1 1 1 47
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
6157 PF10268 Tmemb_161AB 2.60E-12 No_clan Cmu TF