Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu05g0917 ATGGTGATGACTCAGTACGGCATCAAATATGCCGTCCACATTATCACTGCACACTTCGGAAATCTCGTCGCTAAAGTGTGCGAAACCCTGCTCCGAAAGGGACCTCTAACGCTGAGACTTCTTATACGATTCACAGAACTTACCTCATCACAGGTCAACAACTCCCTTCTTATTCTCATCCAACATAATTGCGTTCAAGCCTTCACTGCAGTGACAGAAGGTGAGTTTGGAGACGCACCCAAGGCTGATACACAATACTTGGCATTATTTAGTAATATACTTCATCGTATGAGATTTTCCAAATTCCTGGCAATTGCTTCGGAAAAGCTCGAGAAAGATAAAGATTGTGAAGAACTTCTCGAGGGTCTCCTGCAGAATGGCAGGCTTTCAATGGAACAAATGGTTGAAAGAGCACAGTCAAGTAAAAGTGCAGGAAACCGTCCAATCCCGGATGTTGTACATGACAGTCTATCTAAACTTTTGACTGCCCATTTTGTTGAACGCTGTCCAGCCCCTGAACCAACTCTTTCACCCAAAGTTGAAGAACAGCCTCCTCCTAGAAAAAGAGGTGCTAAGGCTGCCAAGATATCTGAGGTGCCAGAGACCTTAGAACAACGTCTTGTAGAATCAGCACGCCCAATGGAAGTTCTAAGATTTTCAATGGGTGATACTAACACAGAAGCTGGAAAGAGTGAACATTATTCACAAATATCTGGACAGAAGCGCAAGCACGATGATCTGGAGACGGTGCAAGATTCTGGAGATGCAGATGGTATTATTCTTTGGCGTGCCAACTTTGATGAGTTTATAAGATGTCTTAGACATAAGGCTTGCATTGAACATGTTAGATCACAGTTTGATGACGGAGTGGTAAATGTGTTGAGTGCCATTTTGGAGGCTACTCGAAGTTCTGAAAAAATTGTGAAAACAGAGATAACAGTTCCTTTATCATTGGATAACATATATGAGGAGGTAATGAAGAATGAAGTAGGACGGAGTATGACCTTAGATCGGGTTGAAGCTTCCCTCTCCGCATTGGGTTGTCCGGGGATGGATGATTATAAAATTAATTTACGGAAGATCATTGAACAAGCTCAAATTGATGAGGTTGAATCAATTGTTTTAAAAAGATATGGAAGGGATGCTTACAGAATGTTCAGATTCCTGTCAAAAACTGGTGGCTTGGTTGAGACAGAAAAGATTTCCGATAGTTCATTTGTTGATAAGAATGAGGCGCCTAAAATTTTATATAGGTTGTGGAAGGACGAATACCTATACATGGAGAAAGTAGCTCTAACAGTACCTAGGCATTCCCTATGCCTGTTGTGGAGAGTAGACAGATATAATTTGTGGGAACATGTTCTGGATGAGATGTATCATGCTTCATTGAACTTGCAGCTACGACAGGCTTATGAGATGGAAGAAGACAAAGAGCTGCTGAGTCTTCCACCAGATAATCGCAACGAGCCGCTCAAGAAAAGATTTAATCGTTTGAGGAATGTCAGAGGACTCCTGCAGTCGTCACTGCTGAAGCTCGACGATGCTCTAATGCTTTTCCATGACTTCTAA 1569 42.19 MVMTQYGIKYAVHIITAHFGNLVAKVCETLLRKGPLTLRLLIRFTELTSSQVNNSLLILIQHNCVQAFTAVTEGEFGDAPKADTQYLALFSNILHRMRFSKFLAIASEKLEKDKDCEELLEGLLQNGRLSMEQMVERAQSSKSAGNRPIPDVVHDSLSKLLTAHFVERCPAPEPTLSPKVEEQPPPRKRGAKAAKISEVPETLEQRLVESARPMEVLRFSMGDTNTEAGKSEHYSQISGQKRKHDDLETVQDSGDADGIILWRANFDEFIRCLRHKACIEHVRSQFDDGVVNVLSAILEATRSSEKIVKTEITVPLSLDNIYEEVMKNEVGRSMTLDRVEASLSALGCPGMDDYKINLRKIIEQAQIDEVESIVLKRYGRDAYRMFRFLSKTGGLVETEKISDSSFVDKNEAPKILYRLWKDEYLYMEKVALTVPRHSLCLLWRVDRYNLWEHVLDEMYHASLNLQLRQAYEMEEDKELLSLPPDNRNEPLKKRFNRLRNVRGLLQSSLLKLDDALMLFHDF 522
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 8301266 8307803 + CmPI595203_05g009170.1 Cmu05g0917 415831

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmu05g0917 522 MobiDBLite consensus disorder prediction 171 195 - -
Cmu05g0917 522 Pfam RNA polymerase III subunit RPC82 156 338 IPR008806 GO:0003677(InterPro)|GO:0006351(InterPro)
Cmu05g0917 522 FunFam DNA-directed RNA polymerase III subunit RPC3 3 88 - -
Cmu05g0917 522 Gene3D - 361 446 IPR036388 -
Cmu05g0917 522 Gene3D - 91 176 IPR036388 -
Cmu05g0917 522 PANTHER RNA POLYMERASE III DNA DIRECTED -RELATED 3 522 IPR039748 GO:0003697(InterPro)|GO:0005666(PANTHER)|GO:0005666(InterPro)
Cmu05g0917 522 MobiDBLite consensus disorder prediction 225 246 - -
Cmu05g0917 522 Pfam POLR3C, C-terminal winged-helix domain 370 431 - -
Cmu05g0917 522 FunFam DNA-directed RNA polymerase III subunit rpc3 90 177 - -
Cmu05g0917 522 Gene3D - 3 76 IPR036388 -
Cmu05g0917 522 Pfam RNA polymerase III subunit RPC82 helix-turn-helix domain 10 69 IPR013197 -
Cmu05g0917 522 Gene3D - 265 360 IPR036388 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu05g0917 K03023 - - csv:101211588 925.235
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g694 . . . Bda07g01875 . . . . . Cmo18g01272 . . . . . . . . . . . . . . . . . . . . . . . Cone14ag0081 . Lsi05g01220 . . Cme06g01005 . . . . . . . . . . . . Cma18g01249 . Car18g01156 Cpe09g00088 . . . . . . . . Cla05g00886 Cam05g0973 Cec05g0977 Cco05g0976 Clacu05g0960 Cmu05g0917 Cre05g1001 . Csa03g01718 Chy06g00950 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004329 1 4 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 6 1 2 40