Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu05g0923 ATGCCTTCATGGTGGGGGAAGTCGTCATCCAAAGAAGTGAAGAAGAAAACAAGCAAGGAAAGTTTCATCGACTCATTACACCGAAAGTTTAAGAATTCACCTGAAGGTAAAGTAAACAGCAGATCAGGAAGTTCTCGTAAATGTGGTGGTGACACTATATCTGAGAAAGGGTCCAAATCACCAATATCAAGATCGCCATCACCTTCCAAAGAAGTTGCTAGATGTCAAAGTTTTGCAGAAAGATCGTGTTCTCACAAACTTCCACTTCCAGATTTGCACCCTGTAGGTGTAGGTCGCACAGATTCTGGGATTAGTGTGACAGCAAAATCCAAATTAGAGAGAAGCTCCAAGACATCTTTATTCCTACCCCTCCCTAGACCTGCTTGTATTCGAAGTAGGCCAGATCCTGCAGATTTGGATGGAGATTTGGTCACTGGTTCAGTCTTTGGTGAGTCCTCAAGTGATAGTGATGATCCCAGTGATTCACGTCAACGTAGTCCTCAGGCAACTGACTATGACATTGGGGCTAGAACTGTGATAGGTTCTACTGAAGCTAGTGAAACTCTCAAGGATCAGTCTCCTACTGTCGTGCAAATAAATCTAAAAGAGGGCAAGAAATCAGAAAGCCTTCCATTTCCTCATAAGAATTCTTCAATACCTAAACGGAGGCCTTTAAGCAGCAACGTAACAAATCTACAAGTTCCTCGCCATGGGGCCTTCTTTAGCGCACCAGATAGTTCTATGTCTAGTCCCTCTAGAAGTCCCATGAGGATATTTAGCACTGAGCAAGTCATGAACGCTGCTGTTTGGGCTGGAAAATCTCACCCAGATGTCATTTTAGCTGGATCTGGCCCTTGTTCCAGTCCTGGCTCTGGTCACAATTCAGGGCACAACTCTATGGGAGGTGATATGGCAGGCCACTTCTTTTGGCAACAAAGTAAGGGTAGCCCCGAATATTCTCCTGTACCTAGTTCTAGAATGACTAGCCCCGGTCCTAGTTCCAGAATTCAAAGTGGTGCTGTCACACCTATTCATCCGAGAGCAGGAGCTCCACCTGCTGAGTCACAATCATGCTGGCCTGATGAGAAACAAACTCATCGTTTGCCTCTTCCTCCCATAGCAATCTCAAACTCCTCTCCATTTTCGCATTCGAATTCAGCAGTGACATCTCCTTCAGTGCCTAGGAGTCCAGGAAGGACAGAGACTCCAGCAAGCCCAGGTTCACGCTGGAAAAAGGGGAAGCTACTGGGTCGGGGCACATTTGGGCACGTATATGTTGGTTTTAATAGTGAAAGTGGAGAGATGTGTGCAATGAAGGAGGTCACGTTATTTTCTGATGATGCAAAGTCTAAGGAAAGTGCTAAACAATTAATGCAGGAAATTGCTTTACTGAGTCGTTTGAGGCATCCCAACATTGTGCAGTATTATGGTTCGGAAGCAGTGGGTGATAAATTCTATATATATCTGGAATATGTATCTGGTGGTTCCATTTATAAATTACTTCAAGAGTATGGGCAATTTGGGGAACTAGCAATTCGTAACTATACTCAACAAATACTATCAGGACTTGCGTATTTGCATGCTAAAGCTACGGTGCACAGGGATATTAAAGGAGCAAACATACTTGTTGACCCAAATGGTAAAGTTAAATTGGCAGACTTTGGGATGGCGAAGCATATCACCGGCCAATCATGTCCACTATCGTTTAAGGGCAGCCCTTACTGGATGGCACCTGAGGTCATAAAAAACTCAAATGGTTGCAACCTTGCCGTTGATGTTTGGAGTCTTGGATGTACTGTTCTGGAGATGGCTACTACAAAGCCACCCTGGAGCCAGTATGAAGGGGTTGCTGCGATGTTTAAGATTGGTAATAGCAGAGAACTCCCAGTAATTCCAGAGCACCTCTCAGATGATGGGAAGGATTTTGTGAAACTATGTCTGCAACGAAACCCACATCATCGACCTACAGCTGCTCAACTCTTGGAGCATCCTTTTGTCAAAAACGCTGCACCTATAGAGAGGCCTATTTTGAGCTCTGAGCCTTCGGATACAACTCCAGGAGTTACAAACGGAGTGAAGATTTTGGGTATTGGTCAATCACGGACTACTTCTATGGACTCGGATAGTAGACTTGCAGTTCATTCTTCAAGAGTCTCAAAAGCTGCTCTTCATGCCAGTGAAATCAATATTCCCCGAAACATATCATGTCCTGTTTCACCAATCGGAAGCCCTCTTTTGCATTCACGATCCCCTCAACATCCCAGTGGAAGAATGTCTCCTTCACCTATTTCAAGTCCTCGAACCACTTCGGGCTCGTCCACACCTTTGACAGCATGTGGTGGTGCAATTCCTTACAACCACCTGAAACAAGCTATATTCTTGCAAGATGGATTCGGAAGCATGCCAAAGTCCTTAAATAGTAGTCCATACAGCAGCGGTATCTCATTCCACGACTCAAATCCCGATATTTTTCGAGGGTTGCAGCCTGGGGCTCACATCTTCTCTGAAATGATACCAGAAAACGATATCTTGGGAAAGCAGGTTGGACGGCCTGCTTATGGTGAGTTGTATGATGGCCAGCAGGTCCTGGCTGACCGAGTATCTCGTAAGCTCTTACGGGATCATGTTAAAACAAACCCTTCTCTTGATTTGAGTCCTAGCACTACATTGTCTGGCCGCATGAATGGTATCTGA 2694 45.03 MPSWWGKSSSKEVKKKTSKESFIDSLHRKFKNSPEGKVNSRSGSSRKCGGDTISEKGSKSPISRSPSPSKEVARCQSFAERSCSHKLPLPDLHPVGVGRTDSGISVTAKSKLERSSKTSLFLPLPRPACIRSRPDPADLDGDLVTGSVFGESSSDSDDPSDSRQRSPQATDYDIGARTVIGSTEASETLKDQSPTVVQINLKEGKKSESLPFPHKNSSIPKRRPLSSNVTNLQVPRHGAFFSAPDSSMSSPSRSPMRIFSTEQVMNAAVWAGKSHPDVILAGSGPCSSPGSGHNSGHNSMGGDMAGHFFWQQSKGSPEYSPVPSSRMTSPGPSSRIQSGAVTPIHPRAGAPPAESQSCWPDEKQTHRLPLPPIAISNSSPFSHSNSAVTSPSVPRSPGRTETPASPGSRWKKGKLLGRGTFGHVYVGFNSESGEMCAMKEVTLFSDDAKSKESAKQLMQEIALLSRLRHPNIVQYYGSEAVGDKFYIYLEYVSGGSIYKLLQEYGQFGELAIRNYTQQILSGLAYLHAKATVHRDIKGANILVDPNGKVKLADFGMAKHITGQSCPLSFKGSPYWMAPEVIKNSNGCNLAVDVWSLGCTVLEMATTKPPWSQYEGVAAMFKIGNSRELPVIPEHLSDDGKDFVKLCLQRNPHHRPTAAQLLEHPFVKNAAPIERPILSSEPSDTTPGVTNGVKILGIGQSRTTSMDSDSRLAVHSSRVSKAALHASEINIPRNISCPVSPIGSPLLHSRSPQHPSGRMSPSPISSPRTTSGSSTPLTACGGAIPYNHLKQAIFLQDGFGSMPKSLNSSPYSSGISFHDSNPDIFRGLQPGAHIFSEMIPENDILGKQVGRPAYGELYDGQQVLADRVSRKLLRDHVKTNPSLDLSPSTTLSGRMNGI 897
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 8407934 8413698 - CmPI595203_05g009230.1 Cmu05g0923 415837
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu05g0923 897 ProSitePatterns Protein kinases ATP-binding region signature. 416 439 IPR017441 GO:0005524(InterPro)
Cmu05g0923 897 MobiDBLite consensus disorder prediction 371 403 - -
Cmu05g0923 897 MobiDBLite consensus disorder prediction 285 412 - -
Cmu05g0923 897 MobiDBLite consensus disorder prediction 313 340 - -
Cmu05g0923 897 FunFam Mitogen-activated protein kinase kinase kinase 408 691 - -
Cmu05g0923 897 MobiDBLite consensus disorder prediction 878 897 - -
Cmu05g0923 897 MobiDBLite consensus disorder prediction 103 117 - -
Cmu05g0923 897 ProSiteProfiles Protein kinase domain profile. 410 666 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cmu05g0923 897 Pfam Protein kinase domain 411 666 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cmu05g0923 897 MobiDBLite consensus disorder prediction 741 777 - -
Cmu05g0923 897 MobiDBLite consensus disorder prediction 9 35 - -
Cmu05g0923 897 MobiDBLite consensus disorder prediction 880 897 - -
Cmu05g0923 897 MobiDBLite consensus disorder prediction 204 225 - -
Cmu05g0923 897 CDD STKc_MEKK1_plant 409 666 - -
Cmu05g0923 897 MobiDBLite consensus disorder prediction 1 176 - -
Cmu05g0923 897 PANTHER MAP KINASE KINASE KINASE SSK2-RELATED-RELATED 43 671 IPR050538 -
Cmu05g0923 897 MobiDBLite consensus disorder prediction 745 777 - -
Cmu05g0923 897 SMART serkin_6 410 666 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cmu05g0923 897 Gene3D Transferase(Phosphotransferase) domain 1 408 685 - -
Cmu05g0923 897 SUPERFAMILY Protein kinase-like (PK-like) 408 755 IPR011009 -
Cmu05g0923 897 MobiDBLite consensus disorder prediction 36 72 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu01g1493 Cmu-Chr1:28420481 Cmu05g0923 Cmu-Chr5:8407934 8.20E-118 dispersed
Cmu01g1614 Cmu-Chr1:29842127 Cmu05g0923 Cmu-Chr5:8407934 7.30E-96 dispersed
Cmu05g0923 Cmu-Chr5:8407934 Cmu08g1494 Cmu-Chr8:26874659 1.10E-89 dispersed
Cmu01g0301 Cmu-Chr1:3087550 Cmu05g0923 Cmu-Chr5:8407934 3.80E-27 transposed
Cmu02g1566 Cmu-Chr2:29502719 Cmu05g0923 Cmu-Chr5:8407934 4.00E-73 transposed
Cmu03g1512 Cmu-Chr3:11904293 Cmu05g0923 Cmu-Chr5:8407934 9.40E-65 transposed
Cmu06g0580 Cmu-Chr6:6480080 Cmu05g0923 Cmu-Chr5:8407934 3.80E-73 transposed
Cmu11g1784 Cmu-Chr11:29931536 Cmu05g0923 Cmu-Chr5:8407934 3.00E-53 transposed
Cmu01g0446 Cmu-Chr1:4611527 Cmu05g0923 Cmu-Chr5:8407934 0.00E+00 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
75526 PF00069 Pkinase 1.40E-71 CL0016 Cmu PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu05g0923 K20717 - csv:101214961 1589.7