Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu05g0970 ATGATGAAGAATAGCTTCATTTTCCTTGAAATATTATTGTTTTTAGCATTCATCTGGCCGGGGGTTTTCACTGAGCCAGTTGAAGACAAGCAAGCCTTGCTTGATTTCTTCCATAATATCCCCCACTCGCCCTCTCTCAACTGGAATGAGAGTAGTTCTGTGTGCAAATCCTGGACAGGAGTGTTTTGCAATTCTGATGAGTCCAGAGTAGTAGCCTTACGATTACCCGGGACTGGTCTGCGTGGCCCGATCCCTGCGAATACTCTTAGCCGCCTAACTGCGCTCGAGATTCTAAGCCTTAGGTTGAATAGGATATCAGGTCCTTTCCCTTTTGATTTTTCAAAGCTGGAAAGTTTGAATTCCTTGTATCTGCAATACAACAAGTTTTCTGGTCCTTTGCCTTTAGATTTTTCAGTTTGGAATAACCTCAGTGTCATTGATCTATCGAACAATCTCTTTAATGGGAGTATTCCTTCCTCTATCTCAAAGTTGAGTCATTTGACAGTTTTGAATCTTGCAAACAACTCATTTTCAGGCGAAATTCCGAACCTTGATATTCCAAGTTTGCAACGGTTAGATTTGTCCAATAATAATCTTACAGGAAATGTGCCTCACTCTCTTCAAAGATTTCCAAGTTGGGTGTTCTCCGGTAACAATGTTACTCAAGAACATAGTGCAATTCCCCCATCTTTTCCTCTCCAGCCTCCCACTGCTCAACCAACAGGAAAAGGCAAAGGACTGAGTCAATCTGCAATACTTGGTATTGCAATTGGTAGTTCAGTTATTGGGTTTATTTTGCTAGCTGTTTTGTTGACTGCTTGCTGGTTGAAAAAACGAAAGGAAAATATGAGTTCCCCCATGGAGCCCAAAAAGAAGGAAGCGTCTGTGAAGAAAAGGGGCTTTGAGAGCCAAGAACAAAAGAACAACCTCAATTTCTTTCAGGATTCTAATCTTGCATTTGACTTGGAAGACCTGTTGAGAGCATCTGCCGAGGTTCTCGGGAAGGGAACCTTTGGAGTGAGCTACAAAGCAGCTTTGGAAGACTCAATGACTGTTGTAGTGAAGAGGCTGAATCAAGTGACGACGGTTGGAAAACGAGAATTTGAACAGCAGATGCAGTTGATTGGAAATATTAAGCACGAGAACGTTGTTTCCTTAAGAGCATACTATTATTCAAAGGACGAGAAACTCATGGTCTATGACTACTATGAACAAGGGAGTGTGTCTGCAATGTTACATGGTAAGGAAGGAGATGGTTTACATGTGTTAGATTGGGATACTCGGATGAAAATTGCTATTGGAGCAGCTCGAGGTCTTGCTCATATTCACACAGAAAATGGTGGAAAATGTTCCCATGGAAACGTCAGAGCTTCAAACATTTTCCTCAACTCTAAAGGATATGGTTGTGTATCCGACGTTGGCTTGGCTGCGTTGATGAATTCAATTCTACTACCAGCCACAAGAACCCCAGGTTACCGAGCGCCTGAATTGACCGACACTCGAAGAGTATCACACGCAGCTGATGTCTACAGTTTCGGGGTGGTGTTGCTGGAGCTTCTGACTGGAAAATCTCCCATACATGTAGAAGGTTGTAATGAAGTTGTTAATTTGGTGAAGTGGGTGAACTCTGTGGTGAGGGAGGAATGGACAGCAGAAGTGTTTGATGTTGAGCTTCTCAGGTATCCAAACATAGAAGAAGAGATGGTGGAGATGCTGCAAATTGGGTTGTCTTGTGTTGCCAAAATGCCCGAGCAAAGGCCAAAAATGACAGATATAATGTCGAGAATCGAGCAAGTTCGACAACACAGTACAGGAACCCAACCGTCATCGGGGTCAAAATCAGCGTATTCAACTCCCGTTCATGGTCCCACAAGCAGAAACGGTTCTATAAAATTCATTCCGCACCAAATCACCATTAGTTTTCCATCTCCTTCGTCGTTTCTCATCCTCATCCTCTCTTCGTCTTCTTCACAACAAACCCTCACACCAGACCTAAAGCGCCTTCACGAGAACCTCTCTCTTGATTTTTCTTAG 2034 43.12 MMKNSFIFLEILLFLAFIWPGVFTEPVEDKQALLDFFHNIPHSPSLNWNESSSVCKSWTGVFCNSDESRVVALRLPGTGLRGPIPANTLSRLTALEILSLRLNRISGPFPFDFSKLESLNSLYLQYNKFSGPLPLDFSVWNNLSVIDLSNNLFNGSIPSSISKLSHLTVLNLANNSFSGEIPNLDIPSLQRLDLSNNNLTGNVPHSLQRFPSWVFSGNNVTQEHSAIPPSFPLQPPTAQPTGKGKGLSQSAILGIAIGSSVIGFILLAVLLTACWLKKRKENMSSPMEPKKKEASVKKRGFESQEQKNNLNFFQDSNLAFDLEDLLRASAEVLGKGTFGVSYKAALEDSMTVVVKRLNQVTTVGKREFEQQMQLIGNIKHENVVSLRAYYYSKDEKLMVYDYYEQGSVSAMLHGKEGDGLHVLDWDTRMKIAIGAARGLAHIHTENGGKCSHGNVRASNIFLNSKGYGCVSDVGLAALMNSILLPATRTPGYRAPELTDTRRVSHAADVYSFGVVLLELLTGKSPIHVEGCNEVVNLVKWVNSVVREEWTAEVFDVELLRYPNIEEEMVEMLQIGLSCVAKMPEQRPKMTDIMSRIEQVRQHSTGTQPSSGSKSAYSTPVHGPTSRNGSIKFIPHQITISFPSPSSFLILILSSSSSQQTLTPDLKRLHENLSLDFS 677
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 8840476 8844832 + CmPI595203_05g009700.1 Cmu05g0970 415884
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu05g0970 677 FunFam pollen receptor-like kinase 1 296 402 - -
Cmu05g0970 677 MobiDBLite consensus disorder prediction 599 623 - -
Cmu05g0970 677 FunFam protein STRUBBELIG-RECEPTOR FAMILY 8 403 610 - -
Cmu05g0970 677 Gene3D Phosphorylase Kinase; domain 1 292 402 - -
Cmu05g0970 677 ProSiteProfiles Protein kinase domain profile. 327 605 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cmu05g0970 677 Pfam Protein tyrosine and serine/threonine kinase 331 595 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cmu05g0970 677 SUPERFAMILY Protein kinase-like (PK-like) 331 596 IPR011009 -
Cmu05g0970 677 Pfam Leucine Rich Repeat 118 138 IPR001611 GO:0005515(InterPro)
Cmu05g0970 677 Pfam Leucine Rich Repeat 188 209 IPR001611 GO:0005515(InterPro)
Cmu05g0970 677 Pfam Leucine Rich Repeat 142 164 IPR001611 GO:0005515(InterPro)
Cmu05g0970 677 Pfam Leucine Rich Repeat 166 183 IPR001611 GO:0005515(InterPro)
Cmu05g0970 677 Pfam Leucine rich repeat N-terminal domain 28 64 IPR013210 -
Cmu05g0970 677 PANTHER OS05G0588300 PROTEIN 10 613 IPR050994 -
Cmu05g0970 677 Gene3D Ribonuclease Inhibitor 27 234 IPR032675 -
Cmu05g0970 677 Gene3D Transferase(Phosphotransferase) domain 1 403 617 - -
Cmu05g0970 677 FunFam Probable inactive receptor kinase RLK902 26 185 - -
Cmu05g0970 677 SUPERFAMILY L domain-like 38 212 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu05g0970 Cmu-Chr5:8840476 Cmu11g0257 Cmu-Chr11:3111452 1.50E-120 dispersed
Cmu01g0201 Cmu-Chr1:1971034 Cmu05g0970 Cmu-Chr5:8840476 1.50E-167 wgd
Cmu01g0066 Cmu-Chr1:538418 Cmu05g0970 Cmu-Chr5:8840476 2.80E-156 wgd
Cmu05g0970 Cmu-Chr5:8840476 Cmu07g1456 Cmu-Chr7:29686262 1.30E-50 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
75530 PF07714 PK_Tyr_Ser-Thr 1.30E-34 CL0016 Cmu PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu05g0970 - - - 0.0