Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu05g0980 ATGGAGAATTTTGTGGAACGGAATCAAAACAAGCTCAAAAATGAGCTGCTTAAAGGCAAGGAATTAGCAAAGCAACTCCAAATTCATCTCAATATGAGACCATCCGCATCATCCACGGCTGCTTCTTCTTCTTCTTCTTCATTTTCAAATGATAATGGTGGTGAATTATTAGTTCAAAAGATTTTATGTTCATATGAAAAGGCACTGTCTTTGCTCAACTCAAATGGAATCCAAATATCTGAATCTCCTTCATCTATTAATGGAGGAAGTCCAAGAAGTGAAGACTCTGACCGTGAATTCAAGGACCTATTTGATCAAACAAATGCTAATTCTTCCCGCAGAAGGAACATTCTTCCAATTTGGACACAGAAATTCCAAGTTAGTCCAGGGATGGCCCTTGAAGGCTCTCTTGATGATGGCTTCTGCTGGAGGAAATATGGTCAGAAAGGCATTCTTGGTGCCAAACATCCAAGGGGGTACTATAGATGTACATACAGGAACCTCCAAGGTTGTCTTGCAACCAAACAAGTTCAACGGTCCGATGACGATCCGACTGTCTTTGAAATCACGTACCGAGGAAAGCATAGTTGCAGCCAAGTTTCCAATCTTAGTACTCCATCTACAACGACACCAAAGTTTCAGCAACAAAACCAACAAACATCACCTGATGCTCTCTTGAACTCATGGGCATCCTTAAGAGTCATAACTCAAAACCTTGACACAACAATTCATGAAACCCCAACATTGTCATTTCATTACGACGCGGCAGACCGTGTCGAAACGTCGACTGGGGACGTCAACTTTGCCGAGTTTTCTCCATGTTCTTCATTTATGTCTCCAACAACATCTGGTTCTGGGTTGAGCTATTGGTCTGCCTCATCAAGTGGGTTGAGTGAAGGATTTGTTGGGAATCAGAAGTTGGATTTGCAACCAAACAAATGTGAGATTTTTTCGTCACCAACTTCAGCTTTGGACTCTGAAGCTCCTGCCTTAGACTTCCCATTTGGTGACCTTCAATTGGACCCAACTTTCACATTTGACGACACCAATTTCTTCTCCTAA 1062 42.0 MENFVERNQNKLKNELLKGKELAKQLQIHLNMRPSASSTAASSSSSSFSNDNGGELLVQKILCSYEKALSLLNSNGIQISESPSSINGGSPRSEDSDREFKDLFDQTNANSSRRRNILPIWTQKFQVSPGMALEGSLDDGFCWRKYGQKGILGAKHPRGYYRCTYRNLQGCLATKQVQRSDDDPTVFEITYRGKHSCSQVSNLSTPSTTTPKFQQQNQQTSPDALLNSWASLRVITQNLDTTIHETPTLSFHYDAADRVETSTGDVNFAEFSPCSSFMSPTTSGSGLSYWSASSSGLSEGFVGNQKLDLQPNKCEIFSSPTSALDSEAPALDFPFGDLQLDPTFTFDDTNFFS 353
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 8969063 8970445 - CmPI595203_05g009800.1 Cmu05g0980 415894
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu05g0980 353 SUPERFAMILY WRKY DNA-binding domain 136 199 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cmu05g0980 353 FunFam WRKY transcription factor 53 123 200 - -
Cmu05g0980 353 MobiDBLite consensus disorder prediction 200 219 - -
Cmu05g0980 353 Pfam WRKY DNA -binding domain 138 197 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cmu05g0980 353 PANTHER WRKY TRANSCRIPTION FACTOR 30-RELATED-RELATED 13 223 IPR044810 GO:0000976(PANTHER)|GO:0003700(PANTHER)|GO:0003700(InterPro)|GO:0005634(PANTHER)
Cmu05g0980 353 ProSiteProfiles WRKY domain profile. 132 196 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cmu05g0980 353 Gene3D WRKY domain 131 199 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cmu05g0980 353 SMART WRKY_cls 137 199 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu05g0980 Cmu-Chr5:8969063 Cmu09g0907 Cmu-Chr9:8996304 4.90E-30 dispersed
Cmu07g0575 Cmu-Chr7:7084845 Cmu05g0980 Cmu-Chr5:8969063 1.90E-20 transposed
Cmu05g0106 Cmu-Chr5:957838 Cmu05g0980 Cmu-Chr5:8969063 1.30E-35 wgd
Cmu05g0980 Cmu-Chr5:8969063 Cmu07g1477 Cmu-Chr7:29906799 1.10E-42 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
6162 PF03106 WRKY 1.70E-25 CL0274 Cmu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu05g0980 - - - 0.0