Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu05g0986 ATGAATTCAGCTCTCCACAGAGGGTTGGATTCTAGTTTTGATGGAATTAGAAGAACTGAGAAGCTACTGAAATCTTCCTCTTCTAACAAACTCATGCCTGTAGGCTTGCCCTCAGAGAAGAAAATTCTTGATCCACAAGGGCCATTTCTTCAAAGTTGGAACAAGATATTTGTGCTGTCTTGTGTGATTTCTGTTTCGTTGGATCCTTTGTTCTTTTATGTTCCTTTTCGTACAGGATTTATTGGTCCCTCTTCCCGAGTATTTGGAAGAGGTGTTTTAGTAGAAGATTCCTTGACAATAGCAACGAGGTATCTGTCATCATACTTTCTAATTGACATTTCTTCAGTCCTCCCACTTCCACAGGTGGTGATTCTGATAATGAGAGGTTCGAGATCCTTGAATACGAAGGACTTGCTGAAACATGCTGTATTATGTCAATTTGTGCCAAGCTTTCTTCGAATCTATCCACTGTACAAAGAAGTTACAAGGACCTCGGGCATACTCATTGAAACAGCCTGGGCAGGAGCTGCATTTAATCTCTTTCTCTACATGCTAGCTGGCCACGTATTTGGGGCAATCTGTAATGAAGGGAATCTATTCCTCACTGTTATGTGCCCTTCCGCCAAAAAGGCAAATATAGGACCTTTTGACTTTGGAATATTCATTCAAGCCCTTCAACCTGATATTGTGGAGTCGGATTTTCCAAAGAAGTTCCTTCACGGCTTCTGGTGGGGCTTGAGGAATCTAAGCTGTTTGGGGCAAAATCTTACTACAAGTCCTTGCACATGGGAAAACTGCTTTGCCATTTTCGTTTGCGTCTCTGGCTTAGTGTTGTTCGCATCTCTCCTAGGCAACGTGCAGATGTATTGGCGATCCACAAACACAAGAGTGGAGGAGATGAGATTGAGAAGGAAAGATGTTGAACAATGGATGTCATGTCGCTTACTCCCTGAGAATCTGAGGGTGCGGGTTCCGCCATCTTTGCTCGGATTTGCTCATGTTCCAATGTTTGAAAAGATGGATGAACAATTGTTGGACGCGATGTGTGCTCGTCTCAAGCCAGTGCTGTACACACAAAGCTGCATTGTTTGGGAAGGTGATCCAGTTGATGAGATGCTCTTCATAATGAGGGGCAAGCTCTTAACCATGACTACAAATGGTGGGAGAACTGGATTCTTCAACTCTGATTTCCTCATGGCTGGTGATTTCTGTGGAGAAGAGCTATTGACTTGGGCTCTAGACCCTCATTCCTCAACCAATCTCCCTATTTCAACTCGAACTGCCCAATCTCTAATTGAAGTCGAAGCATTTGCTTTTGAATCCAACGACTTGAAATTTGTAGCCTCTCAATACCAGACTTCACAGCAAGCAGGTACGTCAGATTTTCAGATTTTACTCACAGCAGTGGAGAACTTGGGCAGCTTGTTTTGTACAAGCAACATGGCGGTGGTGACGCCATCAAAGAAATAA 1470 43.47 MNSALHRGLDSSFDGIRRTEKLLKSSSSNKLMPVGLPSEKKILDPQGPFLQSWNKIFVLSCVISVSLDPLFFYVPFRTGFIGPSSRVFGRGVLVEDSLTIATRYLSSYFLIDISSVLPLPQVVILIMRGSRSLNTKDLLKHAVLCQFVPSFLRIYPLYKEVTRTSGILIETAWAGAAFNLFLYMLAGHVFGAICNEGNLFLTVMCPSAKKANIGPFDFGIFIQALQPDIVESDFPKKFLHGFWWGLRNLSCLGQNLTTSPCTWENCFAIFVCVSGLVLFASLLGNVQMYWRSTNTRVEEMRLRRKDVEQWMSCRLLPENLRVRVPPSLLGFAHVPMFEKMDEQLLDAMCARLKPVLYTQSCIVWEGDPVDEMLFIMRGKLLTMTTNGGRTGFFNSDFLMAGDFCGEELLTWALDPHSSTNLPISTRTAQSLIEVEAFAFESNDLKFVASQYQTSQQAGTSDFQILLTAVENLGSLFCTSNMAVVTPSKK 489
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 9023703 9033288 + CmPI595203_05g009860.1 Cmu05g0986 415900
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu05g0986 489 SMART cnmp_10 336 466 IPR000595 -
Cmu05g0986 489 SUPERFAMILY cAMP-binding domain-like 332 452 IPR018490 -
Cmu05g0986 489 SUPERFAMILY Voltage-gated potassium channels 44 290 - -
Cmu05g0986 489 ProSiteProfiles cAMP/cGMP binding motif profile. 336 419 IPR000595 -
Cmu05g0986 489 Pfam Ion transport protein 92 289 IPR005821 GO:0005216(InterPro)|GO:0006811(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cmu05g0986 489 CDD CAP_ED 336 451 IPR000595 -
Cmu05g0986 489 Gene3D - 46 290 - -
Cmu05g0986 489 Gene3D Jelly Rolls 334 453 IPR014710 -
Cmu05g0986 489 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 33 76 - -
Cmu05g0986 489 FunFam Cyclic nucleotide-gated ion channel 1 334 451 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu05g0100 Cmu-Chr5:907647 Cmu05g0986 Cmu-Chr5:9023703 3.80E-19 dispersed
Cmu05g0986 Cmu-Chr5:9023703 Cmu10g2225 Cmu-Chr10:28377738 1.40E-115 dispersed
Cmu05g0986 Cmu-Chr5:9023703 Cmu05g0987 Cmu-Chr5:9048192 6.30E-76 tandem
Cmu01g0049 Cmu-Chr1:422307 Cmu05g0986 Cmu-Chr5:9023703 1.10E-158 wgd
Cmu05g0096 Cmu-Chr5:894684 Cmu05g0986 Cmu-Chr5:9023703 1.40E-105 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu05g0986 K05391 - csv:101214911 682.174