Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu05g0992 ATGTGGTCCCCGCTACCCCTAGGTGGCCTCCATCCAAACACACTCATAAATCCAACGGCTCATGTTCATTCTTCTTTTAAACTATCATTGAACTGCCACTTCAATCCTTTCTCATCATTTCCTTTCTTTTTCTCCCTCTTTTTCGTGCATTCACTGAACAAGCTGCAGCTCAGTAATAGCAGCCGGAACTTCCTCCGACGGCCGGTCGCTGGAATGTGCGATCCCACTACCATGATTAAAACCAAAAATGCTCGCCGGAGACGGCTGAGAGTTCGTAAACTGAGGTACAGATGGCAGAGGATGGTGCACGCGGCGGAGGAAGGTGAGGGCAATGAATTAAGTGATAATGGAGTTTCCAAATCGAATTGTGATCAAGTACTAGTCTCTGAGAAGGAATCGTCTTCGGCGTTGGACTGTCGAGTGTATAGCGAGATGTCGATTATAGGGCGGAGGAAGGAGATGGAAGATGAAGTGAGAGTGGAATTGGGATTGACGACGATTAATGATGAGAAGTACAATTTCTTCGCCGTGTACGATGGACACGGCGGCGCTCAGGTGGCGCAGGTGTGCCGTGAACGGTTGCACCGGATTGTGGCGGAGGAGATTGTGGCTCGGGGAGAGATGGATGAGGCGGAGTGGGGGAGGTTGATGGGGAGGTGCTTTGAGAGAATGGACGACGAAGTGAATAGCGGCGCCGCCACGATGAAGACGATCGGATCGGCGGTTGTTACGGCGGTGATCGGAAAGGAAGAGGTGGTGGTGGCCAATTGCGGCGATTGTCGAGCCGTTTTGGCTAGGGATGGTATTGCGTTGCCCTTGTCTAACGATCATAAGCCTGGTAGAGCTGATGAGTTGAAGAGAATTGAATCTGCCGGTGGAAGGGTCATAAATTGGAATGGCTACCGGGTGCTAGGAGTTCTTGCCACTTCAAGATCCATCGGTGATGAATATCTCAAACCATTTGTTATCTCCAAACCAGAAGTGACTGTGACCAAGCGAACTGACAACGATGAGTTCCTCATATTAGGAAGTGATGGTCTATGGGACGTTGTTTCGAATGAAATTGCCTGCAACATAGTGAGGAGATGTTTTGGAGGCAAAATGAAGAGGATTTCGTTGAAGGTGGCGAACGACAGCCATGTCGCAGAAGCTGCAGCAGTGTTGGCGGAGCTCGCTGTGGCTCGTGGAAGCAAGGACAACATCAGTGTAATAGTAGTAGATTTGAGGAAACCAAACCGTTGCTCTCCATGA 1251 49.96 MWSPLPLGGLHPNTLINPTAHVHSSFKLSLNCHFNPFSSFPFFFSLFFVHSLNKLQLSNSSRNFLRRPVAGMCDPTTMIKTKNARRRRLRVRKLRYRWQRMVHAAEEGEGNELSDNGVSKSNCDQVLVSEKESSSALDCRVYSEMSIIGRRKEMEDEVRVELGLTTINDEKYNFFAVYDGHGGAQVAQVCRERLHRIVAEEIVARGEMDEAEWGRLMGRCFERMDDEVNSGAATMKTIGSAVVTAVIGKEEVVVANCGDCRAVLARDGIALPLSNDHKPGRADELKRIESAGGRVINWNGYRVLGVLATSRSIGDEYLKPFVISKPEVTVTKRTDNDEFLILGSDGLWDVVSNEIACNIVRRCFGGKMKRISLKVANDSHVAEAAAVLAELAVARGSKDNISVIVVDLRKPNRCSP 416
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 9096777 9099047 - CmPI595203_05g009920.1 Cmu05g0992 415906
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu05g0992 416 SUPERFAMILY PP2C-like 133 410 IPR036457 -
Cmu05g0992 416 Pfam Protein phosphatase 2C 143 401 IPR001932 -
Cmu05g0992 416 CDD PP2Cc 140 408 IPR001932 -
Cmu05g0992 416 ProSitePatterns PPM-type phosphatase domain signature. 174 182 IPR000222 GO:0043169(InterPro)
Cmu05g0992 416 SMART PP2C_4 126 406 IPR001932 -
Cmu05g0992 416 FunFam Protein phosphatase 2C 50 161 415 - -
Cmu05g0992 416 Gene3D - 136 414 IPR036457 -
Cmu05g0992 416 PANTHER PROTEIN PHOSPHATASE 120 407 IPR015655 GO:0004722(PANTHER)|GO:0004722(InterPro)|GO:0005634(PANTHER)|GO:0006470(InterPro)|GO:0035970(PANTHER)
Cmu05g0992 416 ProSiteProfiles PPM-type phosphatase domain profile. 141 408 IPR001932 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu03g0742 Cmu-Chr3:1593010 Cmu05g0992 Cmu-Chr5:9096777 9.70E-67 dispersed
Cmu05g0856 Cmu-Chr5:7721747 Cmu05g0992 Cmu-Chr5:9096777 4.70E-64 dispersed
Cmu05g0992 Cmu-Chr5:9096777 Cmu07g1365 Cmu-Chr7:28946691 5.00E-58 dispersed
Cmu05g0984 Cmu-Chr5:9005640 Cmu05g0992 Cmu-Chr5:9096777 7.10E-35 proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu05g0992 K14497 - csv:101214188 590.497