Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu05g1001 ATGGGCTACGGCAGGCTCCACAAAACCGACCCCGGCGGCACTTCTTCCTCCGCCGCTGCCTTCCAACTCCCCGACCAACCCCTTTCATTTACCCCTCCCAACCCAAGGAGAACACGCCTTTTCCTTATTTCCCTTCTTTCTCTCCTTCTCATCGTCGCCGCCGCTGTCTCCGCCACCTTTCTCATCGGACTCCGAACTGCCTCCCCGGCTCGATCCGACCCCAACCTCCCTCGAAAACCAACTCAGGCTATTTCCAAGGCTTGTGGTCGAACTCGCTTCCCGACTCTCTGTGTCAACTCGCTCCTCGATTTCCCTGGTTCTCTCAACGCCAACGAACAGGATCTCGTCCACATTTCCTTCAATATCACTCTCCAGCATCTCAACAAAGCGCTCTATTTGTCCTCTGAGATTTCCTCTCTTCAAATGGATCTTCGTGTTCGCTCCGCTTACGATGCTTGTCTCGAACTCCTTGACGACTCCGTTGATGCTCTCACACGTTCCTTGCAATCCGTCGCGCCTTCTTCCTCCTCCGGCACTCCGCAGCGCCTTGGCTCCTCTGAGGACGTCATTACCTGGCTTAGCGCCGCCCTTACCAATCAAGACACGTGTACGGATGGATTCTCTGAACTCTCCGGCTCGGTCAAAAACCAAATGGCTGATAAACTTCACAATTTGTCCGAACTTGTCAGTAATTGCTTGGCGCTGTTTTCCGGTAGTGAAACGAGCGATTTCTCCGGAGTGCCGATTCAGAACAAGCGACGGTTGATGAACGCCGGACACGACGAGGATAATTCCGGTAAATTCCCTGGGTGGATGAGTCGGAGAGAAAGGAGGTTACTGACGTTACCGGTGGGAGCGTTACAAGCCGATATTGTGGTTTCTCAGAACGGTAGCGGAACGGTGAAAACGATCGCCGAAGCGATCAAAAAGGCGCCGCAGTACAGTAATAGAAGGACGATCATATACGTGATGGCAGGAAGGTACGAAGAGAAAAATCTGAAGGTGGGGAGAAAGAAAACGAACCTCATGTTTGTGGGGGATGGCAAGGGTAAAACTGTCATTTCGGGTGCTAAAAGTGTCTTTGATAATGTGACAACTTTTCACACGGCGTCGTTTGCGGCCACCGGCGCCGGTATAATCTTGAGGGACATGACATTTGAGAATTGGGCTGGACCGGGGCGCCACCAGGCGGTTGCGCTTCGAGTTGGCGCCGATCATGCGGTGGTGTACCGCTGCAACATAATCGGGTATCAAGACACTCTGTACGTTCATTCAAACCGCCAATTTTACCGAGAATGCGACATCTACGGGACGGTGGATTTTATCTTCGGGAATGCGGCGGTGGTGTTTCAGAACTGCAGCATTTACGCTCGAAAGGCAATGGCGCTTCAAAAGAACACAATCACCGCCCAAAACCGGAAGGATCCGAATCAGAACACCGGAATTTCAATCCACGCCTGCCGGATTTTACCCGCCTCCGATCTAGCATCGTCTAACGGCACAAACCCGACGTATCTTGGCCGTCCGTGGAAATTATACTCCAGAGTCGTGTACATGTTATCGTATATCGGGAGCCACGTGCATCCTCGCGGTTGGTTGGAATGGAACGCAACATTTGCATTGGACACGCTGTATTACGGTGAGTATATGAATTATGGGCCGGGGGGGGCGGTGGGCCAGAGGGTGACGTGGCCTGGGTATCGAGTCATAACGTCCACGGTGGAGGCGAGTAAGTTCACGGTGGCTCAGTTCATTTACGGCTCCTCATGGTTGCCGTCCACCGGAGTTGCATTCCTCGGAGGGCTAAATGTGTAA 1815 52.95 MGYGRLHKTDPGGTSSSAAAFQLPDQPLSFTPPNPRRTRLFLISLLSLLLIVAAAVSATFLIGLRTASPARSDPNLPRKPTQAISKACGRTRFPTLCVNSLLDFPGSLNANEQDLVHISFNITLQHLNKALYLSSEISSLQMDLRVRSAYDACLELLDDSVDALTRSLQSVAPSSSSGTPQRLGSSEDVITWLSAALTNQDTCTDGFSELSGSVKNQMADKLHNLSELVSNCLALFSGSETSDFSGVPIQNKRRLMNAGHDEDNSGKFPGWMSRRERRLLTLPVGALQADIVVSQNGSGTVKTIAEAIKKAPQYSNRRTIIYVMAGRYEEKNLKVGRKKTNLMFVGDGKGKTVISGAKSVFDNVTTFHTASFAATGAGIILRDMTFENWAGPGRHQAVALRVGADHAVVYRCNIIGYQDTLYVHSNRQFYRECDIYGTVDFIFGNAAVVFQNCSIYARKAMALQKNTITAQNRKDPNQNTGISIHACRILPASDLASSNGTNPTYLGRPWKLYSRVVYMLSYIGSHVHPRGWLEWNATFALDTLYYGEYMNYGPGGAVGQRVTWPGYRVITSTVEASKFTVAQFIYGSSWLPSTGVAFLGGLNV 604
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 9241125 9243612 + CmPI595203_05g010010.1 Cmu05g1001 415915
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu05g1001 604 Gene3D - 284 602 IPR012334 -
Cmu05g1001 604 CDD PMEI-like_3 87 237 - -
Cmu05g1001 604 ProSitePatterns Pectinesterase signature 2. 435 444 IPR033131 -
Cmu05g1001 604 PANTHER PECTINESTERASE 43 593 - GO:0030599(PANTHER)|GO:0046910(PANTHER)
Cmu05g1001 604 NCBIfam pectinesterase inhibitor domain 57 236 IPR006501 GO:0004857(InterPro)
Cmu05g1001 604 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 82 237 IPR035513 -
Cmu05g1001 604 Pfam Plant invertase/pectin methylesterase inhibitor 83 235 IPR006501 GO:0004857(InterPro)
Cmu05g1001 604 Pfam Pectinesterase 290 587 IPR000070 GO:0030599(InterPro)|GO:0042545(InterPro)
Cmu05g1001 604 SUPERFAMILY Pectin lyase-like 286 600 IPR011050 -
Cmu05g1001 604 FunFam Pectinesterase 284 602 - -
Cmu05g1001 604 Gene3D Invertase/pectin methylesterase inhibitor family protein 81 238 IPR035513 -
Cmu05g1001 604 FunFam Pectinesterase 80 239 - -
Cmu05g1001 604 SMART PMEI_2 79 235 IPR006501 GO:0004857(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu05g1001 Cmu-Chr5:9241125 Cmu09g0534 Cmu-Chr9:4907670 3.10E-133 dispersed
Cmu01g0042 Cmu-Chr1:347287 Cmu05g1001 Cmu-Chr5:9241125 9.40E-207 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu05g1001 - - - 0.0