Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu05g1004 ATGGATTTGGACAGTATCGAGTGTGTATCTTCTTCAGATGGTCTCGATGAAGACGAGATCCATCTGCACCACACTCTTCATCCTTATTCCCAATCTCTTCATCTTCCCGAGTTGTCCACATCGAAGCAACGTTATGGAAACAACAACAGCGCTGTGAGCGGCCCAACAGCAACTGCGCCGGCAACTAACGTTCATGAATTGCTGGAGTGCCCTGTGTGCACTAATTCTATGTACCCTCCCATTCATCAGTGCCACAATGGACATACCTTATGTTCTACATGTAAAACGAGAGTTCACAATCGGTGCCCAACTTGTAGACAAGAGCTTGGAGATATTAGGTGCTTAGCACTGGAGAAGGTGGCAGAGTCACTTGAACTGCCTTGCAAGTATTATTCGTTGGGTTGCTCTGAGATATTCCCATACTACAGTAAACTTAAGCACGAGGGTTTGTGCAACTACAGACCCTATGGTTGCCCATATGCTGGTTCAGAATGCTCTGCTGTTGGGGACATTCCTTTCCTTGTTGCCCATCTGAGGGATGATCATAAGGTGGATATGCACACTGGCTGCACATTTAACCATCGCTATGTTAAATCCAATCCAAGGGAAGTGGAGAATGCCACTTGGATGCTTACTGTTTTTCATTGTTTTGGTCAATATTTCTGCCTTCACTTTGAAGCTTTTCAGCTTGGCATGGCTCCAGTCTACATGGCCTTCCTGCGTTTCATGGGCGATGAGAATGAGGCGCGAACCTACAACTACAGTCTCGAGGTTGGTGGATATGGGCGAAAACTGATATGGGAGGGTACACCACGAAGTATTAGAGATAGTCATCGAAAAGTCAGGGACAGCCACGATGGATTAATTATCCAAAGAAATATGGCTCTTTTCTTCTCTGGTGGGGACAGAAAGGAACTGAAGCTGAGGGTTACAGGAAGGATATGGAAGGAACAAAACCCAGATGCTGGTGTCTGCATACCAAACTTTTGTAGCTAA 996 45.88 MDLDSIECVSSSDGLDEDEIHLHHTLHPYSQSLHLPELSTSKQRYGNNNSAVSGPTATAPATNVHELLECPVCTNSMYPPIHQCHNGHTLCSTCKTRVHNRCPTCRQELGDIRCLALEKVAESLELPCKYYSLGCSEIFPYYSKLKHEGLCNYRPYGCPYAGSECSAVGDIPFLVAHLRDDHKVDMHTGCTFNHRYVKSNPREVENATWMLTVFHCFGQYFCLHFEAFQLGMAPVYMAFLRFMGDENEARTYNYSLEVGGYGRKLIWEGTPRSIRDSHRKVRDSHDGLIIQRNMALFFSGGDRKELKLRVTGRIWKEQNPDAGVCIPNFCS 331
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 9275390 9279015 - CmPI595203_05g010040.1 Cmu05g1004 415918
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu05g1004 331 ProSiteProfiles Zinc finger SIAH-type profile. 123 183 IPR013010 GO:0008270(InterPro)
Cmu05g1004 331 CDD RING-HC_SIAHs 68 106 - -
Cmu05g1004 331 FunFam E3 ubiquitin-protein ligase SINAT3 122 178 - -
Cmu05g1004 331 FunFam E3 ubiquitin-protein ligase SINAT3 11 121 - -
Cmu05g1004 331 CDD Sina 184 312 - -
Cmu05g1004 331 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 177 311 IPR008974 GO:0005515(InterPro)
Cmu05g1004 331 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 32 122 IPR013083 -
Cmu05g1004 331 ProSiteProfiles Zinc finger RING-type profile. 70 106 IPR001841 -
Cmu05g1004 331 FunFam E3 ubiquitin-protein ligase SINAT5-like 179 311 - -
Cmu05g1004 331 PANTHER E3 UBIQUITIN PROTEIN LIGASE SIAH 49 313 IPR052088 GO:0005737(PANTHER)|GO:0061630(PANTHER)
Cmu05g1004 331 Pfam Sina, zinc finger 119 194 - -
Cmu05g1004 331 Pfam E3 ubiquitin-protein ligase sina/sinah, RING finger 70 105 IPR049548 -
Cmu05g1004 331 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 123 176 IPR013083 -
Cmu05g1004 331 SUPERFAMILY RING/U-box 57 109 - -
Cmu05g1004 331 Pfam Sina, TRAF-like domain 214 311 IPR018121 GO:0005737(InterPro)|GO:0006511(InterPro)|GO:0007275(InterPro)
Cmu05g1004 331 SUPERFAMILY TRAF domain-like 123 315 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu04g0175 Cmu-Chr4:3786140 Cmu05g1004 Cmu-Chr5:9275390 8.60E-132 dispersed
Cmu05g1004 Cmu-Chr5:9275390 Cmu06g0127 Cmu-Chr6:1218718 7.60E-142 dispersed
Cmu05g1004 Cmu-Chr5:9275390 Cmu05g1005 Cmu-Chr5:9279976 1.50E-193 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu05g1004 K04506 - csv:105434867 689.878