Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu05g1005 ATGGCCGCCGCTGCTCTCAGGTCCAGGTCTTCCAAGGAAGTTGCCACTTTAACCCTTTCTCGTTGTAGACACTGTATATCCAATTCTATTCACGCTGCTACCAACCCCAGTTCTCACTGCATCAACCGTAACAAACCCAACGACCTTTATCTCAACTCGCCTTACCACTTGGTCTCTTTCAAGCCCGTCTCACTCAGAGGCGACTTCGTTGACAACGGGACTCAACCCCCCGATCATCGTAGGATTTACCAGAATTCTACCAAGAACTTGAATCACAAGTTCAGCAAGAGGGGTTGTTTTATGAGCACTTATGGAGACCCGCCGGAGGTGTGGTCTGGAGATGGGATTGTGATTCGTGGGAGTAATTCAAGCTTGAATGGTCGCGGTGGCGGTGGTGGCAGCGGTGGCAACTCCAACTCTGGTTCTGGTGGTGGGTTTGCCTCGAACTCCAATGATGGGTGTTGGGGTGGCTCTAATTTGGGACCTAATTTTCCTACTCCTAAGGAAATCGCCAAGGGGCTTGATAAGTTTGTGATTGGTCAGGAGAGAGCTAAAAAGGTGCTCTCTGTGGGAGTTTACAATCACTACAAGCGCATCTATCATGAATCGCTACAAAGGCCGACAGGAGATACAGTTAACAACAAAGCTGATGCTGTTGATGATGATAAAGTGGAACTTGAGAAAAGTAACATCCTTCTGATGGGGCCAACAGGCTCAGGGAAAACACTACTCGCCAAAACCTTGGCACGGTTTGTTAATGTCCCCTTTGTTATTGCAGATGCAACTACCCTAACACAGGCAGGATATGTTGGAGAAGATGTGGAGTCTATATTATACAAACTTCTGATGGTTGCTGATTATAATGTGGCAGCTGCACAGCAGGGCATTGTTTACATTGATGAAGTCGATAAAATTACCAAGAAGGCAGAGAGCCTTAATATTAGCAGAGATGTGTCAGGAGAGGGCGTGCAGCAGGCATTATTAAAAATGCTAGAAGGAACGATTGTCAATGTGCCTGAGAAGGGCGCACGAAAGCATCCCAGAGGTGAAAATATCCAGATTGACACTAAGGATATTCTTTTCATATGCGGGGGTGCCTTCATTGACTTGGAAAAAACAATCTCAGAAAGGCGCCAAGATTCTTCTTTAGGGTTTGGGGCCCCAGTTCGTGCAAACATGAGGGCAGGTGGTGTTACAGATGCCATGGTTACTTCTTCTCTGTTGGAGACTGTTGAAAGTAGTGATCTCATTGCATATGGGTTGATACCCGAATTTGTTGGTCGATTCCCAATCCTTGTCAGTTTGTCAGCCCTAACAGAAAACCAACTTGTTCAGGTCTTGACAGAGCCAAAAAATGCATTAGGAAAGCAGTATAGAAAGATGTTCCAAATGAATGATGTCAAGCTCCACTTCACAGAAAATGCCCTGAGATTAATAGCAAGAAAGGCAATGTCGAAGAACACTGGAGCACGTGGTTTGCGATCAATATTGGAGAATCTATTGATGGATTCTATGTATGAGATTCCTGATGTTAGAACAGGTGAGAATATAATTGATGCTGTCATCGTTGATGAAGAATCCATTGGGTTGGACAGACCCGGTTCTGGTGCCAAAATTCTTTATGGAAAGGGTGCATTGGAACGCTATCTTTCAGGACAAAAGGTATACTTTATGAGTGGGGTTGTCTTCATTTCTGCAGATTTTTTGTTGTGGTTAATGGATTTGGATAGTATTGAGTGTGTATCATCTTCTGATGGTCTCGATGAAGATGAGATCCATCTTCATCACACTCTTCATCCTTATTCCCATTCTCATCATCATCCAGAGTTGTCAGCGACGAAGCCACGTAATGGAAGCAATAATAGCGGTATAACAGTTCCCACTGCGACTGCTCCCGCCACTAGCGTCCATGAATTGCTTGAGTGCCCTGTCTGTACCAATTCTATGTACCCTCCCATCCATCAGTGCCACAATGGACATACCTTATGTTCTACATGTAAAACACGGGTTCATAATCGTTGCCCTACTTGTAGACAAGAGCTTGGAGATATTAGGTGCTTAGCACTCGAGAAGGTGGCAGAGTCGCTTGAATTGCCTTGCAAGTATTATTCATTGGGATGTACTGAGATATTCCCATACTACAGTAAACTTAAGCACGAGGCTTTGTGCAATTATAGACCCTATAGTTGCCCATATGCTGGTTCGGAATGCTCTGCTGTTGGGGACATTCCTTTCCTTGTTGCCCATCTGAGGGATGATCATAAGGTGGATATGCACACGGGCTGCACATTTAACCATCGCTATGTGAAATCCAATCCAAGGGAAGTGGAAAATGCCACTTGGATGCTTACTGTGTTCCATTGTTTTGGTCAATATTTCTGTCTTCACTTTGAAGCCTTTCAGCTTGGCATGGCCCCAGTCTATATGGCTTTCCTTCGTTTCATGGGTGATGAGAATGAGGCACGAACCTACAGCTACAGTCTCGAGGTTGGTGGATATGGGCGAAAACTAATATGGGAGGGCACCCCGCGAAGTATTAGAGATAGTCATCGAAAAGTGAGGGACAGCCATGATGGGCTAATCATTCAAAGAAATATGGCTCTTTTCTTCTCTGGTGGGGACAGGAAGGAACTGAAACTAAGAGTTACAGGAAGGATATGGAAGGAACAAAACCCAGATGCTGGAGTCTGCATACCGAACCTGTGTAGCTAA 2712 45.1 MAAAALRSRSSKEVATLTLSRCRHCISNSIHAATNPSSHCINRNKPNDLYLNSPYHLVSFKPVSLRGDFVDNGTQPPDHRRIYQNSTKNLNHKFSKRGCFMSTYGDPPEVWSGDGIVIRGSNSSLNGRGGGGGSGGNSNSGSGGGFASNSNDGCWGGSNLGPNFPTPKEIAKGLDKFVIGQERAKKVLSVGVYNHYKRIYHESLQRPTGDTVNNKADAVDDDKVELEKSNILLMGPTGSGKTLLAKTLARFVNVPFVIADATTLTQAGYVGEDVESILYKLLMVADYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTIVNVPEKGARKHPRGENIQIDTKDILFICGGAFIDLEKTISERRQDSSLGFGAPVRANMRAGGVTDAMVTSSLLETVESSDLIAYGLIPEFVGRFPILVSLSALTENQLVQVLTEPKNALGKQYRKMFQMNDVKLHFTENALRLIARKAMSKNTGARGLRSILENLLMDSMYEIPDVRTGENIIDAVIVDEESIGLDRPGSGAKILYGKGALERYLSGQKVYFMSGVVFISADFLLWLMDLDSIECVSSSDGLDEDEIHLHHTLHPYSHSHHHPELSATKPRNGSNNSGITVPTATAPATSVHELLECPVCTNSMYPPIHQCHNGHTLCSTCKTRVHNRCPTCRQELGDIRCLALEKVAESLELPCKYYSLGCTEIFPYYSKLKHEALCNYRPYSCPYAGSECSAVGDIPFLVAHLRDDHKVDMHTGCTFNHRYVKSNPREVENATWMLTVFHCFGQYFCLHFEAFQLGMAPVYMAFLRFMGDENEARTYSYSLEVGGYGRKLIWEGTPRSIRDSHRKVRDSHDGLIIQRNMALFFSGGDRKELKLRVTGRIWKEQNPDAGVCIPNLCS 903
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 9279976 9292836 - CmPI595203_05g010050.1 Cmu05g1005 415919
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu05g1005 903 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 695 750 IPR013083 -
Cmu05g1005 903 PANTHER ATP-DEPENDENT CLP PROTEASE ATP-BINDING SUBUNIT CLPX-LIKE, MITOCHONDRIAL-RELATED 21 553 IPR050052 GO:0005524(PANTHER)|GO:0005759(PANTHER)|GO:0016887(PANTHER)|GO:0051603(PANTHER)
Cmu05g1005 903 ProSiteProfiles Zinc finger SIAH-type profile. 695 755 IPR013010 GO:0008270(InterPro)
Cmu05g1005 903 CDD RING-HC_SIAHs 640 678 - -
Cmu05g1005 903 SMART ClpB_D2_small_2 438 530 IPR019489 -
Cmu05g1005 903 Pfam Sina, TRAF-like domain 786 883 IPR018121 GO:0005737(InterPro)|GO:0006511(InterPro)|GO:0007275(InterPro)
Cmu05g1005 903 SUPERFAMILY TRAF domain-like 695 887 - -
Cmu05g1005 903 SMART AAA_5 227 389 IPR003593 GO:0016887(InterPro)
Cmu05g1005 903 CDD Sina 756 884 - -
Cmu05g1005 903 FunFam CLP protease regulatory subunit CLPX3 mitochondrial 158 436 - -
Cmu05g1005 903 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 752 883 IPR008974 GO:0005515(InterPro)
Cmu05g1005 903 Pfam AAA domain (Cdc48 subfamily) 227 431 IPR003959 GO:0005524(InterPro)|GO:0016887(InterPro)
Cmu05g1005 903 NCBIfam ATP-dependent protease ATP-binding subunit ClpX 163 525 IPR004487 GO:0005524(InterPro)|GO:0006457(InterPro)|GO:0051082(InterPro)|GO:0140662(InterPro)
Cmu05g1005 903 CDD RecA-like_ClpX 165 435 - -
Cmu05g1005 903 MobiDBLite consensus disorder prediction 602 623 - -
Cmu05g1005 903 Pfam E3 ubiquitin-protein ligase sina/sinah, RING finger 642 677 IPR049548 -
Cmu05g1005 903 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 164 523 IPR027417 -
Cmu05g1005 903 Gene3D - 160 436 IPR027417 -
Cmu05g1005 903 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 604 694 IPR013083 -
Cmu05g1005 903 MobiDBLite consensus disorder prediction 122 144 - -
Cmu05g1005 903 Pfam Sina, zinc finger 691 766 - -
Cmu05g1005 903 FunFam E3 ubiquitin-protein ligase SINAT5-like 751 883 - -
Cmu05g1005 903 Pfam C-terminal, D2-small domain, of ClpB protein 438 507 IPR019489 -
Cmu05g1005 903 FunFam ATP-dependent Clp protease ATP-binding subunit ClpX 437 536 - -
Cmu05g1005 903 ProSiteProfiles Zinc finger RING-type profile. 642 678 IPR001841 -
Cmu05g1005 903 Gene3D - 437 534 - -
Cmu05g1005 903 FunFam E3 ubiquitin-protein ligase SINAT3 694 750 - -
Cmu05g1005 903 SUPERFAMILY RING/U-box 629 681 - -
Cmu05g1005 903 FunFam E3 ubiquitin-protein ligase SINAT3 583 693 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu05g1005 Cmu-Chr5:9279976 Cmu08g0179 Cmu-Chr8:3845410 4.10E-182 dispersed
Cmu05g1004 Cmu-Chr5:9275390 Cmu05g1005 Cmu-Chr5:9279976 1.50E-193 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu05g1005 K03544 - csv:101215939 964.911