Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu05g1005 ATGGCCGCCGCTGCTCTCAGGTCCAGGTCTTCCAAGGAAGTTGCCACTTTAACCCTTTCTCGTTGTAGACACTGTATATCCAATTCTATTCACGCTGCTACCAACCCCAGTTCTCACTGCATCAACCGTAACAAACCCAACGACCTTTATCTCAACTCGCCTTACCACTTGGTCTCTTTCAAGCCCGTCTCACTCAGAGGCGACTTCGTTGACAACGGGACTCAACCCCCCGATCATCGTAGGATTTACCAGAATTCTACCAAGAACTTGAATCACAAGTTCAGCAAGAGGGGTTGTTTTATGAGCACTTATGGAGACCCGCCGGAGGTGTGGTCTGGAGATGGGATTGTGATTCGTGGGAGTAATTCAAGCTTGAATGGTCGCGGTGGCGGTGGTGGCAGCGGTGGCAACTCCAACTCTGGTTCTGGTGGTGGGTTTGCCTCGAACTCCAATGATGGGTGTTGGGGTGGCTCTAATTTGGGACCTAATTTTCCTACTCCTAAGGAAATCGCCAAGGGGCTTGATAAGTTTGTGATTGGTCAGGAGAGAGCTAAAAAGGTGCTCTCTGTGGGAGTTTACAATCACTACAAGCGCATCTATCATGAATCGCTACAAAGGCCGACAGGAGATACAGTTAACAACAAAGCTGATGCTGTTGATGATGATAAAGTGGAACTTGAGAAAAGTAACATCCTTCTGATGGGGCCAACAGGCTCAGGGAAAACACTACTCGCCAAAACCTTGGCACGGTTTGTTAATGTCCCCTTTGTTATTGCAGATGCAACTACCCTAACACAGGCAGGATATGTTGGAGAAGATGTGGAGTCTATATTATACAAACTTCTGATGGTTGCTGATTATAATGTGGCAGCTGCACAGCAGGGCATTGTTTACATTGATGAAGTCGATAAAATTACCAAGAAGGCAGAGAGCCTTAATATTAGCAGAGATGTGTCAGGAGAGGGCGTGCAGCAGGCATTATTAAAAATGCTAGAAGGAACGATTGTCAATGTGCCTGAGAAGGGCGCACGAAAGCATCCCAGAGGTGAAAATATCCAGATTGACACTAAGGATATTCTTTTCATATGCGGGGGTGCCTTCATTGACTTGGAAAAAACAATCTCAGAAAGGCGCCAAGATTCTTCTTTAGGGTTTGGGGCCCCAGTTCGTGCAAACATGAGGGCAGGTGGTGTTACAGATGCCATGGTTACTTCTTCTCTGTTGGAGACTGTTGAAAGTAGTGATCTCATTGCATATGGGTTGATACCCGAATTTGTTGGTCGATTCCCAATCCTTGTCAGTTTGTCAGCCCTAACAGAAAACCAACTTGTTCAGGTCTTGACAGAGCCAAAAAATGCATTAGGAAAGCAGTATAGAAAGATGTTCCAAATGAATGATGTCAAGCTCCACTTCACAGAAAATGCCCTGAGATTAATAGCAAGAAAGGCAATGTCGAAGAACACTGGAGCACGTGGTTTGCGATCAATATTGGAGAATCTATTGATGGATTCTATGTATGAGATTCCTGATGTTAGAACAGGTGAGAATATAATTGATGCTGTCATCGTTGATGAAGAATCCATTGGGTTGGACAGACCCGGTTCTGGTGCCAAAATTCTTTATGGAAAGGGTGCATTGGAACGCTATCTTTCAGGACAAAAGGTATACTTTATGAGTGGGGTTGTCTTCATTTCTGCAGATTTTTTGTTGTGGTTAATGGATTTGGATAGTATTGAGTGTGTATCATCTTCTGATGGTCTCGATGAAGATGAGATCCATCTTCATCACACTCTTCATCCTTATTCCCATTCTCATCATCATCCAGAGTTGTCAGCGACGAAGCCACGTAATGGAAGCAATAATAGCGGTATAACAGTTCCCACTGCGACTGCTCCCGCCACTAGCGTCCATGAATTGCTTGAGTGCCCTGTCTGTACCAATTCTATGTACCCTCCCATCCATCAGTGCCACAATGGACATACCTTATGTTCTACATGTAAAACACGGGTTCATAATCGTTGCCCTACTTGTAGACAAGAGCTTGGAGATATTAGGTGCTTAGCACTCGAGAAGGTGGCAGAGTCGCTTGAATTGCCTTGCAAGTATTATTCATTGGGATGTACTGAGATATTCCCATACTACAGTAAACTTAAGCACGAGGCTTTGTGCAATTATAGACCCTATAGTTGCCCATATGCTGGTTCGGAATGCTCTGCTGTTGGGGACATTCCTTTCCTTGTTGCCCATCTGAGGGATGATCATAAGGTGGATATGCACACGGGCTGCACATTTAACCATCGCTATGTGAAATCCAATCCAAGGGAAGTGGAAAATGCCACTTGGATGCTTACTGTGTTCCATTGTTTTGGTCAATATTTCTGTCTTCACTTTGAAGCCTTTCAGCTTGGCATGGCCCCAGTCTATATGGCTTTCCTTCGTTTCATGGGTGATGAGAATGAGGCACGAACCTACAGCTACAGTCTCGAGGTTGGTGGATATGGGCGAAAACTAATATGGGAGGGCACCCCGCGAAGTATTAGAGATAGTCATCGAAAAGTGAGGGACAGCCATGATGGGCTAATCATTCAAAGAAATATGGCTCTTTTCTTCTCTGGTGGGGACAGGAAGGAACTGAAACTAAGAGTTACAGGAAGGATATGGAAGGAACAAAACCCAGATGCTGGAGTCTGCATACCGAACCTGTGTAGCTAA 2712 45.1 MAAAALRSRSSKEVATLTLSRCRHCISNSIHAATNPSSHCINRNKPNDLYLNSPYHLVSFKPVSLRGDFVDNGTQPPDHRRIYQNSTKNLNHKFSKRGCFMSTYGDPPEVWSGDGIVIRGSNSSLNGRGGGGGSGGNSNSGSGGGFASNSNDGCWGGSNLGPNFPTPKEIAKGLDKFVIGQERAKKVLSVGVYNHYKRIYHESLQRPTGDTVNNKADAVDDDKVELEKSNILLMGPTGSGKTLLAKTLARFVNVPFVIADATTLTQAGYVGEDVESILYKLLMVADYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTIVNVPEKGARKHPRGENIQIDTKDILFICGGAFIDLEKTISERRQDSSLGFGAPVRANMRAGGVTDAMVTSSLLETVESSDLIAYGLIPEFVGRFPILVSLSALTENQLVQVLTEPKNALGKQYRKMFQMNDVKLHFTENALRLIARKAMSKNTGARGLRSILENLLMDSMYEIPDVRTGENIIDAVIVDEESIGLDRPGSGAKILYGKGALERYLSGQKVYFMSGVVFISADFLLWLMDLDSIECVSSSDGLDEDEIHLHHTLHPYSHSHHHPELSATKPRNGSNNSGITVPTATAPATSVHELLECPVCTNSMYPPIHQCHNGHTLCSTCKTRVHNRCPTCRQELGDIRCLALEKVAESLELPCKYYSLGCTEIFPYYSKLKHEALCNYRPYSCPYAGSECSAVGDIPFLVAHLRDDHKVDMHTGCTFNHRYVKSNPREVENATWMLTVFHCFGQYFCLHFEAFQLGMAPVYMAFLRFMGDENEARTYSYSLEVGGYGRKLIWEGTPRSIRDSHRKVRDSHDGLIIQRNMALFFSGGDRKELKLRVTGRIWKEQNPDAGVCIPNLCS 903
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 9279976 9292836 - CmPI595203_05g010050.1 Cmu05g1005 415919

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmu05g1005 903 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 695 750 IPR013083 -
Cmu05g1005 903 PANTHER ATP-DEPENDENT CLP PROTEASE ATP-BINDING SUBUNIT CLPX-LIKE, MITOCHONDRIAL-RELATED 21 553 IPR050052 GO:0005524(PANTHER)|GO:0005759(PANTHER)|GO:0016887(PANTHER)|GO:0051603(PANTHER)
Cmu05g1005 903 ProSiteProfiles Zinc finger SIAH-type profile. 695 755 IPR013010 GO:0008270(InterPro)
Cmu05g1005 903 CDD RING-HC_SIAHs 640 678 - -
Cmu05g1005 903 SMART ClpB_D2_small_2 438 530 IPR019489 -
Cmu05g1005 903 Pfam Sina, TRAF-like domain 786 883 IPR018121 GO:0005737(InterPro)|GO:0006511(InterPro)|GO:0007275(InterPro)
Cmu05g1005 903 SUPERFAMILY TRAF domain-like 695 887 - -
Cmu05g1005 903 SMART AAA_5 227 389 IPR003593 GO:0016887(InterPro)
Cmu05g1005 903 CDD Sina 756 884 - -
Cmu05g1005 903 FunFam CLP protease regulatory subunit CLPX3 mitochondrial 158 436 - -
Cmu05g1005 903 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 752 883 IPR008974 GO:0005515(InterPro)
Cmu05g1005 903 Pfam AAA domain (Cdc48 subfamily) 227 431 IPR003959 GO:0005524(InterPro)|GO:0016887(InterPro)
Cmu05g1005 903 NCBIfam ATP-dependent protease ATP-binding subunit ClpX 163 525 IPR004487 GO:0005524(InterPro)|GO:0006457(InterPro)|GO:0051082(InterPro)|GO:0140662(InterPro)
Cmu05g1005 903 CDD RecA-like_ClpX 165 435 - -
Cmu05g1005 903 MobiDBLite consensus disorder prediction 602 623 - -
Cmu05g1005 903 Pfam E3 ubiquitin-protein ligase sina/sinah, RING finger 642 677 IPR049548 -
Cmu05g1005 903 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 164 523 IPR027417 -
Cmu05g1005 903 Gene3D - 160 436 IPR027417 -
Cmu05g1005 903 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 604 694 IPR013083 -
Cmu05g1005 903 MobiDBLite consensus disorder prediction 122 144 - -
Cmu05g1005 903 Pfam Sina, zinc finger 691 766 - -
Cmu05g1005 903 FunFam E3 ubiquitin-protein ligase SINAT5-like 751 883 - -
Cmu05g1005 903 Pfam C-terminal, D2-small domain, of ClpB protein 438 507 IPR019489 -
Cmu05g1005 903 FunFam ATP-dependent Clp protease ATP-binding subunit ClpX 437 536 - -
Cmu05g1005 903 ProSiteProfiles Zinc finger RING-type profile. 642 678 IPR001841 -
Cmu05g1005 903 Gene3D - 437 534 - -
Cmu05g1005 903 FunFam E3 ubiquitin-protein ligase SINAT3 694 750 - -
Cmu05g1005 903 SUPERFAMILY RING/U-box 629 681 - -
Cmu05g1005 903 FunFam E3 ubiquitin-protein ligase SINAT3 583 693 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu05g1005 K03544 - - csv:101215939 964.911
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu05g1005 Cmu-Chr5:9279976 Cmu08g0179 Cmu-Chr8:3845410 4.10E-182 dispersed
Cmu05g1004 Cmu-Chr5:9275390 Cmu05g1005 Cmu-Chr5:9279976 1.50E-193 tandem
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cmu08g0421 . 77 566 C3H Transcription Factor Family AT2G31510 75.1 4.8e-225 777.3
Cmu11g0809 . 25 438 C3H Transcription Factor Family AT2G31510 54.3 3.7e-108 389.0
Cmu08g0421 . 60 522 C3H Transcription Factor Family AT2G31770 59.7 2.4e-169 592.4
Cmu08g0421 . 60 529 C3H Transcription Factor Family AT2G31760 58.3 3.6e-167 585.1
Cmu01g1462 . 8 169 C3H Transcription Factor Family AT5G06490 54.6 1.4e-47 186.4
Cmu01g1462 . 8 169 C3H Transcription Factor Family AT5G06490 54.6 1.4e-47 186.4
Cmu11g0502 . 1 226 C3H Transcription Factor Family AT3G02290 62.8 5.1e-76 281.2
Cmu06g1122 . 177 481 C3H Transcription Factor Family AT1G11020 75.3 5.1e-135 477.6
Cmu07g1448 . 62 221 C3H Transcription Factor Family AT1G50440 75.6 3.9e-68 255.0
Cmu04g0277 . 93 453 C3H Transcription Factor Family AT5G08750 61.0 4.8e-121 431.4
Cmu10g1708 . 26 456 C3H Transcription Factor Family AT3G16090 71.3 5.0e-166 581.3
Cmu11g0502 . 1 225 C3H Transcription Factor Family AT5G38895 58.0 4.5e-73 271.9
Cmu08g1475 . 16 227 C3H Transcription Factor Family AT1G19310 66.8 1.3e-79 293.1
Cmu01g1572 . 16 225 C3H Transcription Factor Family AT1G19310 59.8 2.0e-69 259.2
Cmu01g1849 . 9 323 C3H Transcription Factor Family AT2G22120 83.6 5.7e-159 557.4
Cmu08g1011 . 70 177 C3H Transcription Factor Family AT5G07040 67.6 3.1e-40 161.8
Cmu06g1554 . 30 418 C3H Transcription Factor Family AT1G18470 76.1 5.8e-179 624.0
Cmu01g0573 . 81 312 C3H Transcription Factor Family AT1G68200 50.2 4.9e-50 195.3
Cmu08g0421 . 60 522 C3H Transcription Factor Family AT2G31770 59.7 2.4e-169 592.4
Cmu08g0421 . 60 529 C3H Transcription Factor Family AT2G31760 58.3 3.6e-167 585.1
Cmu07g0123 . 25 372 C3H Transcription Factor Family AT2G30580 50.9 9.0e-82 300.8
Cmu09g2048 . 102 334 C3H Transcription Factor Family AT5G55970 67.8 4.8e-93 338.2
Cmu04g0277 . 93 453 C3H Transcription Factor Family AT5G63780 57.2 7.9e-116 414.1
Cmu10g2495 . 1 428 C3H Transcription Factor Family AT3G58030 52.7 9.8e-105 377.5
Cmu09g2048 . 515 812 C3H Transcription Factor Family AT4G26580 62.0 1.6e-110 396.4
Cmu04g0666 . 51 515 C3H Transcription Factor Family AT5G01960 68.5 2.3e-167 585.5
Cmu07g0585 . 1 482 C3H Transcription Factor Family AT5G01960 58.2 8.8e-151 530.4
Cmu02g1084 . 1 152 C3H Transcription Factor Family AT2G04240 60.1 1.0e-43 173.3
Cmu02g2268 . 1 242 C3H Transcription Factor Family AT5G19430 52.8 1.2e-62 236.9
Cmu07g1101 . 130 585 C3H Transcription Factor Family AT5G45290 52.9 4.7e-104 375.6
Cmu02g2268 . 40 242 C3H Transcription Factor Family AT5G12310 55.8 1.2e-57 220.3
Cmu06g1453 . 124 416 C3H Transcription Factor Family AT5G05810 52.8 3.7e-74 275.8
Cmu11g0649 . 53 205 C3H Transcription Factor Family AT5G05830 58.2 2.0e-44 176.0
Cmu11g0502 . 1 226 C3H Transcription Factor Family AT5G15790 59.9 4.8e-74 274.6
Cmu11g0682 . 1 272 C3H Transcription Factor Family AT3G55530 80.2 5.0e-115 411.0
Cmu09g0639 . 27 339 C3H Transcription Factor Family AT1G63900 65.9 7.6e-111 397.1
Cmu05g0298 . 10 392 C3H Transcription Factor Family AT2G44580 53.7 3.3e-120 428.7
Cmu08g1475 . 25 150 C3H Transcription Factor Family AT1G74990 59.8 9.2e-41 163.3
Cmu05g1635 . 3 314 C3H Transcription Factor Family AT5G20910 63.5 8.5e-111 397.1
Cmu10g1708 . 144 444 C3H Transcription Factor Family AT1G65040 68.0 1.5e-107 386.3
Cmu01g1572 . 17 227 C3H Transcription Factor Family AT2G23780 62.1 1.0e-73 273.5
Cmu08g1475 . 6 229 C3H Transcription Factor Family AT2G23780 57.0 7.0e-70 260.8
Cmu10g2374 . 1 317 C3H Transcription Factor Family AT3G10810 53.6 2.3e-81 300.1
Cmu01g0237 . 1 170 C3H Transcription Factor Family AT1G63840 56.1 2.0e-45 179.1
Cmu01g0631 . 18 327 C3H Transcription Factor Family AT1G68070 63.1 5.0e-104 374.8
Cmu05g0199 . 49 376 C3H Transcription Factor Family AT1G68070 50.2 1.0e-88 323.9
Cmu10g1184 . 47 368 C3H Transcription Factor Family AT1G68070 50.2 3.1e-82 302.4
Cmu11g1877 . 4 182 C3H Transcription Factor Family AT1G76410 55.2 2.7e-51 198.7
Cmu10g0860 . 1 159 C3H Transcription Factor Family AT1G76410 56.3 4.8e-45 177.9
Cmu08g1226 . 1 410 C3H Transcription Factor Family AT1G80400 54.0 1.0e-111 400.6
Cmu10g0860 . 1 150 C3H Transcription Factor Family AT2G17450 57.5 5.2e-39 157.9
Cmu08g0421 . 77 566 C3H Transcription Factor Family AT2G31510 75.1 4.8e-225 777.3
Cmu11g0809 . 25 438 C3H Transcription Factor Family AT2G31510 54.3 3.7e-108 389.0
Cmu01g1462 . 7 168 C3H Transcription Factor Family AT2G35910 64.0 1.0e-54 210.3
Cmu10g2549 . 15 161 C3H Transcription Factor Family AT2G35910 51.0 5.0e-41 164.9
Cmu04g0175 . 1 307 C3H Transcription Factor Family AT2G41980 80.5 4.8e-151 530.8
Cmu05g1005 . 633 890 C3H Transcription Factor Family AT2G41980 80.6 1.5e-128 456.1
Cmu05g1004 . 61 318 C3H Transcription Factor Family AT2G41980 79.8 9.8e-128 453.4
Cmu02g2360 . 41 337 C3H Transcription Factor Family AT2G41980 71.8 3.7e-127 451.4
Cmu01g0741 . 48 305 C3H Transcription Factor Family AT2G41980 79.1 1.2e-125 446.4
Cmu06g0127 . 43 301 C3H Transcription Factor Family AT2G41980 74.9 9.5e-123 436.8
Cmu05g2722 . 168 418 C3H Transcription Factor Family AT2G41980 79.3 6.2e-122 434.1
Cmu05g0598 . 119 392 C3H Transcription Factor Family AT3G06140 63.3 4.4e-95 345.1
Cmu10g2756 . 33 329 C3H Transcription Factor Family AT3G09770 59.0 1.4e-85 313.5
Cmu06g1744 . 58 368 C3H Transcription Factor Family AT3G47990 69.7 1.7e-127 452.6
Cmu01g1265 . 58 349 C3H Transcription Factor Family AT3G47990 69.8 1.1e-120 429.9
Cmu11g1877 . 4 183 C3H Transcription Factor Family AT1G20823 55.6 1.1e-50 196.8
Cmu10g0860 . 1 159 C3H Transcription Factor Family AT1G20823 58.0 1.2e-46 183.3
Cmu09g1710 . 37 405 C3H Transcription Factor Family AT3G18930 54.4 3.1e-84 309.3
Cmu10g0894 . 20 235 C3H Transcription Factor Family AT5G66070 75.0 3.1e-75 278.5
Cmu10g2792 . 3 273 C3H Transcription Factor Family AT5G02750 53.4 6.2e-68 254.6
Cmu06g1554 . 34 489 C3H Transcription Factor Family AT1G73950 72.4 2.3e-194 675.2
Cmu08g0166 . 1 160 C3H Transcription Factor Family AT1G33480 50.6 7.3e-39 157.9
Cmu01g0631 . 15 251 C3H Transcription Factor Family AT2G01735 60.8 5.2e-74 274.6
Cmu10g1184 . 60 269 C3H Transcription Factor Family AT2G01735 53.3 4.3e-52 201.8
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001359 1 5 2 3 1 2 5 2 1 2 2 2 4 2 2 4 2 2 4 2 2 2 2 2 2 3 2 3 4 3 75