Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu05g1017 ATGGAAAAGTTTGGAGATGAGGATGAGGCAGAGGTTTTGGGGTCGGACCCCACTGTGATGGTATGGTGTAAGCCTCTTGTCAAGATTCAAACTACCTTAAAATATGATGCTGCAGGAATCAGATGGGGTTCCACTACTTTGCAAGGCTTGCGAGAAGAAATGGAAGACGATGCTGTTGTGCGGTCTGATGGTTTCAATGGCTTCTTGTTTGCTGCAGTGTTCGATGGCCATGGTGGCCATTCCTCTGTCAAGTTCCTCAGGGAGGAGCTGTACAAAGACTGCGTCGTAGCTTTACAAGGCGGCCTGCTATTGAATGGAGGGGATTTTGAAGTGATAAAATCGGCGTTGGAGAAAGCTTTTGATGATACTGATAAGAGATTACTCCTTTTGCTTGAGGCAGCTGGGGAGGAAGATGAATCTGGTTCCACTGCCACTGTTGCATTCATTCGAAATGATGTGCTGTTCATTTCACATATTGGTGACTCTTGTATTGTATTATCTCGTTCTGGAGGAGCACAGGTGTTGACTAGTTCTCATCGGCCTTATGGAAATAACAGCACTTCACTACAAGAAATTAGAAGAATTAGAGAAGCAGGTGGATGGATTGTTAATGGGAGAATCTGCGGGGACATCTCTGTATCGCGTGCATTTGGTGACATACGATTCAAGACAAAGAAAATCGAGATGCTACAAAAAGGAGTTGAAGAAGGGAGATGGTCAGAAAAATTTATTTCTCGTGTACAGTTCAATGGAGATTTGGTTACTGCATCACCAGAAATTTTCCAAGTTACGCTCGGATCAAATGTTGAATTTATACTGATGGCATCAGATGGCCTATGGGATTACATGAATAGCTCTGATGCGGTTATATTTGTTCGGAATGAACTTCGACAGCATGGCGATGTTCAGCTAGCATGTGAAGCCCTCGCTCAAGCAGCCTTGGATAAAGGGTCACAAGACAATATCAGCATTATCATGGCTGATTTAGGGCGGACAGATTGGCAAAATTTGCCCCTTAAGCAAGACAATGTCATATTTGAGCTGGCTCAAGCTTTCGCTACGATCGGACTTGTTTCTTTTGGTCAGAATGGCTTAGATTATGACCAGCGGGGTCTTAATGGTAACATGTGGATCATCAGTAGTTATTTTGATTTTCAATATAACAACTGA 1170 43.33 MEKFGDEDEAEVLGSDPTVMVWCKPLVKIQTTLKYDAAGIRWGSTTLQGLREEMEDDAVVRSDGFNGFLFAAVFDGHGGHSSVKFLREELYKDCVVALQGGLLLNGGDFEVIKSALEKAFDDTDKRLLLLLEAAGEEDESGSTATVAFIRNDVLFISHIGDSCIVLSRSGGAQVLTSSHRPYGNNSTSLQEIRRIREAGGWIVNGRICGDISVSRAFGDIRFKTKKIEMLQKGVEEGRWSEKFISRVQFNGDLVTASPEIFQVTLGSNVEFILMASDGLWDYMNSSDAVIFVRNELRQHGDVQLACEALAQAALDKGSQDNISIIMADLGRTDWQNLPLKQDNVIFELAQAFATIGLVSFGQNGLDYDQRGLNGNMWIISSYFDFQYNN 389
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 9365112 9369245 + CmPI595203_05g010170.1 Cmu05g1017 415931
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu05g1017 389 PANTHER PROTEIN PHOSPHATASE 2C 39 328 IPR015655 GO:0004722(InterPro)|GO:0006470(InterPro)|GO:0006470(PANTHER)
Cmu05g1017 389 ProSiteProfiles PPM-type phosphatase domain profile. 41 329 IPR001932 -
Cmu05g1017 389 FunFam Protein phosphatase 2C 57 40 336 - -
Cmu05g1017 389 Pfam Protein phosphatase 2C 43 322 IPR001932 -
Cmu05g1017 389 SMART PP2C_4 31 327 IPR001932 -
Cmu05g1017 389 SUPERFAMILY PP2C-like 34 330 IPR036457 -
Cmu05g1017 389 ProSitePatterns PPM-type phosphatase domain signature. 70 78 IPR000222 GO:0043169(InterPro)
Cmu05g1017 389 CDD PP2Cc 40 329 IPR001932 -
Cmu05g1017 389 Gene3D - 40 335 IPR036457 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu05g1017 Cmu-Chr5:9365112 Cmu08g0589 Cmu-Chr8:18023066 6.60E-28 dispersed
Cmu05g1017 Cmu-Chr5:9365112 Cmu03g0687 Cmu-Chr3:1053201 1.90E-22 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu05g1017 K04457 - csv:101218076 600.127