Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu05g1022 ATGTCGGACGCTTATTGGAGGTACACCGACTCACAGCAGCAGCCTCCGTCGTCGGTTCCTGCCGTCGTCGGCAAGCGCCCTCGCGTCGATTACGATACCACTGGTCTTCACGAGTTGCCCAACTATTACCCTCGTCAAGATGATAGACCAGTGCTCCAAGGAATTAAAAGTGTTGATTCCATCAACGAGTCCTATGAACGTTACCTACGCAGCTCGCAAATTTCATCTTATGGTGGACAGTCTGCTAGACCTGTTGGTGGGGGAGTTCCTGGTCATTCAATCAATGATCCACCTATATTGGGGATTGGGGGTGTGGTTTCAGGGGCTAATGTTAATGATAGAAGTACGAGCTTTGGAGGTGGGAGGCCTAACATACCCCTTCCACCTGATGCTTCTAATACACTATTTGTGGAAGGCTTGCCTTCCAGCTGTACACGACGTGAAGTAGCTCACATATTCCGCCCTTTTGTTGGCTACAAAGAAGTGAGACTTGTTAACAAGGAATCCAGAAATCCTGGAAGAGATCCAGTGGTCCTTGGTTTTGTAGATTTTGTGAGTCCTGCCCATGCAGCCACGGCCATGGATGCCTTACAAGGTTATAAATTTGATGAGTTTGACCGTGACTCGGTCAATTTAAGGTTGCAATTTGCTCGCTTTCCTGGTGCAAGGATTTGCGCGTACGGTGAATGCCGAAATGGACGACTCGACCGTAGGCAGGAGCAGAATGGTGTACTGAGATTCAGAAGAAACCATCATTTCGATTCTGATCTATCTGCAGATGGAAAAATTGCCAACCGAAATCTGCCTGAAGATATTCTGTTTGTTGGATTCTCAGAACCTCGCAACCGCACTTCAAGGAAGTGGAACTCCTTAGCTTCAGACAATATCTTATGGTCGAACTTATTCAAGGAGAGGTGGGGGGAAAACCATGCTGCATTTTATCACCCAGTCGGTTCAAAGTCATGGAAGGATTCATATGAGGTGCAAGATCGATGTGATCGATTTGGACTGGGCCTAAGAATTATCCGAGAAGGGAATGACTACTACCTCATTCACCAAGGTGAAATCCAGAGGCACCTAGGATCAAGAAGACAAAAGAATGGACAGACGAGTTTTCTTCCTTTGAGTTCAAAAAGAGAGTTCCTGTCAGAAGGACTTCTCGAAGAAGACAAATCCTGTCGAGGAATTCTGGACAGGATCCTTTTCTTCATTGGAGACTTGGAAGTTGCTTCGACGGATGCAAAGCGCAGCAGAGCAAAAACAATTTTGAAGGCCTTGACAGCCAAATATAATACATATGAGCGAAACCTTCACTATGGGCAAGTTGTGGTAAATGTCTTTGAAGTTTGTTCATTACATATTGATGTCGTTTTGAAAAGAGGAGTATGGCCTTCTGTTCAGCGTCTTTACCAAAGGAAGCTCCAAAAGATGGCTGCTTTTGCCTCATTGCCCCTCACTTCGTCTTCTTTACATCCTGTTGTCCAATTCTCACCTCTTGTATTCTCCTCAACAGTTGTATATGACCCAAGTTCCTATTGCCTCACAGTCAGATCAATCAGACATGGAAAGCAAAAATTTTCCCCTCAGACCAACCGAAGGAGCCTGATAATTCTTGGTGCAGCAACAAAACAAGCAAAAACACCAGCTGAAGAGGATTGGAAGGTGAAGAGGGAACTTCTGCTACAGAAAAGGGTAAGAAGTGTGGATGCTAATGAAGCTCTGCGCCTTCAGAAGGAAAACAAGTTTGTGATTCTTGATGTCAGGCCAGAAGCAGAATTCAAAGAGGGCCATCCACCAGGTGCCATTAATGTGCAAATCTACAGGCTTATAAAGGAGTGGACAGCATGGGACATAGCCAGGAGAGCTGCATTTGCATTTTTTGGCATCTTTTCGGGTACAGAAGAAAACCCAGAATTCTTGCAAAGTGTAGAATCTCAAATAGATAAAAATGCCAAAATAATAGTAGCATGTTCATCAGGTGGAACAATGAAACCTACCCAGAATCTTCCAGAAGGTCAACAATCAAGGTCATTGATAGCAGCCTACTTGTTGGTTCTGAATGGCTACTCCAACGTGTTTCACTTAGAAGGTGGTCTCTACAGTTGGTTCAAAGAAGGATTGCCTGTAGTTTCAGAAGAGTAA 2142 44.82 MSDAYWRYTDSQQQPPSSVPAVVGKRPRVDYDTTGLHELPNYYPRQDDRPVLQGIKSVDSINESYERYLRSSQISSYGGQSARPVGGGVPGHSINDPPILGIGGVVSGANVNDRSTSFGGGRPNIPLPPDASNTLFVEGLPSSCTRREVAHIFRPFVGYKEVRLVNKESRNPGRDPVVLGFVDFVSPAHAATAMDALQGYKFDEFDRDSVNLRLQFARFPGARICAYGECRNGRLDRRQEQNGVLRFRRNHHFDSDLSADGKIANRNLPEDILFVGFSEPRNRTSRKWNSLASDNILWSNLFKERWGENHAAFYHPVGSKSWKDSYEVQDRCDRFGLGLRIIREGNDYYLIHQGEIQRHLGSRRQKNGQTSFLPLSSKREFLSEGLLEEDKSCRGILDRILFFIGDLEVASTDAKRSRAKTILKALTAKYNTYERNLHYGQVVVNVFEVCSLHIDVVLKRGVWPSVQRLYQRKLQKMAAFASLPLTSSSLHPVVQFSPLVFSSTVVYDPSSYCLTVRSIRHGKQKFSPQTNRRSLIILGAATKQAKTPAEEDWKVKRELLLQKRVRSVDANEALRLQKENKFVILDVRPEAEFKEGHPPGAINVQIYRLIKEWTAWDIARRAAFAFFGIFSGTEENPEFLQSVESQIDKNAKIIVACSSGGTMKPTQNLPEGQQSRSLIAAYLLVLNGYSNVFHLEGGLYSWFKEGLPVVSEE 713
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 9400869 9412901 + CmPI595203_05g010220.1 Cmu05g1022 415936

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmu05g1022 713 ProSiteProfiles Rhodanese domain profile. 578 711 IPR001763 -
Cmu05g1022 713 SUPERFAMILY RNA-binding domain, RBD 118 222 IPR035979 GO:0003676(InterPro)
Cmu05g1022 713 Coils Coil 416 436 - -
Cmu05g1022 713 Pfam RNA recognition motif 135 203 IPR000504 GO:0003723(InterPro)
Cmu05g1022 713 Gene3D - 129 219 IPR012677 -
Cmu05g1022 713 FunFam Rhodanese-like domain-containing protein 14, chloroplastic 552 710 - -
Cmu05g1022 713 CDD RHOD 572 702 - -
Cmu05g1022 713 SMART rhod_4 568 708 IPR001763 -
Cmu05g1022 713 SUPERFAMILY F-box domain 283 330 IPR036047 GO:0005515(InterPro)
Cmu05g1022 713 MobiDBLite consensus disorder prediction 1 19 - -
Cmu05g1022 713 MobiDBLite consensus disorder prediction 1 24 - -
Cmu05g1022 713 CDD RRM_AtNSRA_like 130 218 - -
Cmu05g1022 713 SMART rrm1_1 134 211 IPR000504 GO:0003723(InterPro)
Cmu05g1022 713 Pfam Rhodanese-like domain 570 704 IPR001763 -
Cmu05g1022 713 SUPERFAMILY Rhodanese/Cell cycle control phosphatase 563 710 IPR036873 -
Cmu05g1022 713 PANTHER RHODANESE-LIKE DOMAIN-CONTAINING PROTEIN 14, CHLOROPLASTIC-RELATED 484 712 IPR043186 GO:0009507(PANTHER)
Cmu05g1022 713 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 133 219 IPR000504 GO:0003723(InterPro)
Cmu05g1022 713 Gene3D - 552 709 IPR036873 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu05g1022 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu05g1022 Cmu-Chr5:9400869 Cmu08g0616 Cmu-Chr8:18372005 3.60E-48 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g997 . Blo15g00078 . . . Bpe07g01026 . . Cmo16g00036 . . . . . Sed07g0876 . Cpe14g00024 Bhi01g01519 Tan01g0061 Cmetu06g0246 . Hepe07g0039 Mch10g0037 . . . . . . . . . . . Cone15ag0001 . . . Cme06g01169 . . Bda06g00795 . . . . Bma12g01221 . . . Cma16g00031 . Car16g00029 . . . . . . . . . . Cla05g00987 Cam05g1078 Cec05g1086 Cco05g1080 Clacu05g1072 Cmu05g1022 Cre05g1096 . Csa03g01965 . .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cmu05g1090 . 1246 1561 Sulfurtransferasese/Rhodanese AT1G79230 75.6 4.9e-146 514.2
Cmu05g1090 . 1246 1510 Sulfurtransferasese/Rhodanese AT1G16460 73.6 2.0e-113 405.6
Cmu04g1182 . 97 373 Sulfurtransferasese/Rhodanese AT5G23060 60.5 2.2e-82 302.8
Cmu05g0105 . 448 908 Sulfurtransferasese/Rhodanese AT4G01050 51.7 4.0e-118 422.2
Cmu01g1071 . 6 609 Sulfurtransferasese/Rhodanese AT1G09280 63.9 7.4e-225 776.9
Cmu07g0579 . 84 436 Sulfurtransferasese/Rhodanese AT2G40760 75.6 1.6e-156 549.7
Cmu10g2278 . 568 896 Sulfurtransferasese/Rhodanese AT1G17850 69.2 4.6e-142 501.5
Cmu04g0174 . 30 235 Sulfurtransferasese/Rhodanese AT2G42220 73.8 9.3e-86 313.5
Cmu10g2912 . 379 559 Sulfurtransferasese/Rhodanese AT3G08920 63.0 1.8e-64 242.7
Cmu06g1791 . 1 292 Sulfurtransferasese/Rhodanese AT4G24750 66.8 2.7e-111 398.7
Cmu02g2261 . 67 292 Sulfurtransferasese/Rhodanese AT5G19370 66.1 2.7e-85 312.4
Cmu10g1323 . 113 454 Sulfurtransferasese/Rhodanese AT5G55130 73.7 1.5e-146 516.2
Cmu05g1022 . 533 713 Sulfurtransferasese/Rhodanese AT4G27700 79.0 3.1e-78 288.5
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011827 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 30