Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu05g1042 ATGGCCGCAACGAGCATTGGAGCTCTGTGGAGTCTAAGAAGAGCAGCTCAATCTTCGAGTCTTCTAAGCCCTTTTGCCGTTAACCGCGATAAACTCTCCTTCCACGAGGCCCGGTTTCCCTTTTCTTCCTCTTCTCCTCTGGGGTCCTCAGGAATATGCCAATTAGTGCAAGCTGTAAAGGGAGATATTGATGTTTTACTCAATGGAGTTGGAGATAAAGGTGTTATTGTAGACGTGAAACATATTCTTGTGATGGCCAAACGTTCATTATCAAGACGAGAAGTTCTCCATACAAACTTTCTCACTCCACCTGTGGTGAAAGAGTCAATGCTAGCTATACAAAAACTAGCTGACGTGAAAGCAATAGCTCAGGGAGGATACCCAGAGGCAGAGCGCTGCCGGATTTCTGTTGGGCATGCAGATGAACTAACAAGTGATCCAGACATAATTTCAGCATTGAGCATCACAGGAAATTTTACGTTTCACCCTTGCTCACATGGGGACTTCCTTGGAGCAATTCTTGGTACGGGCATTGCTAGGGAAAAACTTGGTGATATCATACTCCAGGAAGAAAAGGGAGCTCAAGTGGTCATTGTTCCAGAACTTGTTGACTTCCTGGTATCATCACTACGCAAGGTTGGCAATGTTACGGTTTCTTGTACAAGGATTCCATTGACAGCTCTTGAATATGAACCACCGAAGATTAAGACATTTAAAACCATTGAGGCATCTCTTAGGGTGGATGCTCTAGCAAGTGCTGGATTCAAGATTTCACGATCTAAACTAGTGGATTTAATCAGTAGTGGCGATGTTCGTGTCAATTGGACGCAAATTACAAAAAATGGAACCATTTTAAAGACTGGTGATATCGTTTCTGTTAGTGGAAAAGGGAGACTAAAGGTATGTGTAAGTTCTGGCGATATTGGATCAATTGGAGGTGAACTGGGTATCTTTGGATGTAATTGCAAAATGTAG 975 43.18 MAATSIGALWSLRRAAQSSSLLSPFAVNRDKLSFHEARFPFSSSSPLGSSGICQLVQAVKGDIDVLLNGVGDKGVIVDVKHILVMAKRSLSRREVLHTNFLTPPVVKESMLAIQKLADVKAIAQGGYPEAERCRISVGHADELTSDPDIISALSITGNFTFHPCSHGDFLGAILGTGIAREKLGDIILQEEKGAQVVIVPELVDFLVSSLRKVGNVTVSCTRIPLTALEYEPPKIKTFKTIEASLRVDALASAGFKISRSKLVDLISSGDVRVNWTQITKNGTILKTGDIVSVSGKGRLKVCVSSGDIGSIGGELGIFGCNCKM 324
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 9597909 9603794 - CmPI595203_05g010420.1 Cmu05g1042 415956

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmu05g1042 324 ProSiteProfiles S4 RNA-binding domain profile. 245 306 - -
Cmu05g1042 324 FunFam BnaA05g14690D protein 239 296 - -
Cmu05g1042 324 CDD S4 246 300 - -
Cmu05g1042 324 SMART s4_6 245 309 IPR002942 GO:0003723(InterPro)
Cmu05g1042 324 SUPERFAMILY Alpha-L RNA-binding motif 127 303 - -
Cmu05g1042 324 Pfam S4 domain 249 291 IPR002942 GO:0003723(InterPro)
Cmu05g1042 324 Gene3D - 146 228 IPR012677 -
Cmu05g1042 324 Pfam Putative RNA-binding domain in YlmH 151 226 IPR040591 -
Cmu05g1042 324 NCBIfam photosystem II S4 domain protein 78 301 IPR017506 -
Cmu05g1042 324 PANTHER PUTATIVE RNA-BINDING DOMAIN-CONTAINING PROTEIN-RELATED 209 295 - -
Cmu05g1042 324 Gene3D - 239 296 IPR036986 GO:0003723(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu05g1042 - - - - 0.0
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g212 . . . . Bpe09g00236 . . Bma13g00952 . Cmo04g00586 . . . . . . . . . . . . . . . . . . . . . . . Cone14ag1060 . . . . . . Blo10g00761 . Bda12g00838 . . . . . . . Cma04g00552 . Car04g00521 . . Cpe01g00494 . . . . . . . Cla05g01006 Cam05g1095 Cec05g1105 Cco05g1098 Clacu05g1091 Cmu05g1042 Cre05g1115 . . Chy06g01159 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010642 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 32