Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu05g1053 ATGGTCTTTGTTTTGATCTTCTTCTCTCTCACTTGCTCTTTCTCACCTTCCTATGGATATGACTCATTGGACCCTTATGCTAACATTACCATCACATGGAATTTCTTGGTAGAGAATGGGGATACTTATGATGTGAGGGTTTCATTGTACAATTTCCAACTGTTTCGCCATGTGGAGTTGCCTGGTTGGAAACTTGGCTGGTCATGGAAAGGTGAGGAGGTTATATGGAGTATGTGGGGAGCAGAGGCTACTCAGCAAGGAAATTGCTCCAAATACATAGGCAGAGAGCTTCCTCATTGTTGTGAGAAGAAGCCTGTGATTGTTGATCTTATGCCTGGAGCTCCTTATAAGTTGCAGGTGGCTAATTGTTGTAAAGGAGGCGTGCTATCTTCCATGAGACAAGAGTCTGCCAACTATGGAGCTGCCTTCCAAATGAATGTTGGGAAGTCTTCTGGAAAGGATGTAGATAACAAAATGCCTGAAAATTTCACACTGGGGCTTCCTGGATATACTTGTAGCGAACCATTTCAAGTCCCTCCGACCAAGTTCAGTAAGGATGGCGGTCGCCGGTGGACACAAGTTCTAGAAACATGGAATGTGACCTGTGTTTACTCCCAATTCCAATCATCACCAACACCAAGGTGCTGCGTTTCATTGTCATCTTTCTACAACAGCACCATTGTCCCTTGCCCTCAGTGCAGCTGTGGTTGCCAAGGGCTAGAGGGAACAAAATGTGTCAAGTCAGGTGAAACTCCTTCAGTGTTGCAACTTCCACATGAACATTACACTGCTGAAGTAGAACCATTGGTGAGGTGTTCACAGCACATGTGCCCAATAAGGGTGCATTGGCACGTGAAACAGAGTTATACACAGTATTGGAGGGTAAAGATAACAATCACAAATCTAAACTTTGCTAAGAATTACTCTGAATGGAACTTAGTAGTGATGCATCCCAATTTGCGGAATATTACTCAAGTTTTCAGCTTCAACTACAGCCCCCTCAATCAGTATGGTAACATCAATGACACAGGGATGTTTTGGGGGATTCACTTCTACAATGACTTGTTACTCACATCAGGAGAGAGAGGGAATGTCCAAACAGAAATTCTTCTCCAAAAAGATTCAGAAATTTTCACTTTCAGAGAAGGATGGGCATTCCCAAGAAGAATTTTGTTCAATGGGGATGAATGTGTAATGCCACCTCCAGACCAATATCCAAGGCTCCCAAATAAATCTCACAGGGCCATGGCAGCCTCATTCATAGTTTTCTTCTTCTTGTTTCTCTCTGTATCATTATAA 1299 43.19 MVFVLIFFSLTCSFSPSYGYDSLDPYANITITWNFLVENGDTYDVRVSLYNFQLFRHVELPGWKLGWSWKGEEVIWSMWGAEATQQGNCSKYIGRELPHCCEKKPVIVDLMPGAPYKLQVANCCKGGVLSSMRQESANYGAAFQMNVGKSSGKDVDNKMPENFTLGLPGYTCSEPFQVPPTKFSKDGGRRWTQVLETWNVTCVYSQFQSSPTPRCCVSLSSFYNSTIVPCPQCSCGCQGLEGTKCVKSGETPSVLQLPHEHYTAEVEPLVRCSQHMCPIRVHWHVKQSYTQYWRVKITITNLNFAKNYSEWNLVVMHPNLRNITQVFSFNYSPLNQYGNINDTGMFWGIHFYNDLLLTSGERGNVQTEILLQKDSEIFTFREGWAFPRRILFNGDECVMPPPDQYPRLPNKSHRAMAASFIVFFFLFLSVSL 432
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 9814573 9818019 + CmPI595203_05g010530.1 Cmu05g1053 415967
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu05g1053 432 PIRSF COBRA 1 432 IPR006918 GO:0010215(InterPro)|GO:0016020(InterPro)
Cmu05g1053 432 PANTHER PROTEIN COBRA 5 427 IPR006918 GO:0010215(InterPro)|GO:0016020(InterPro)|GO:0046658(PANTHER)|GO:0052324(PANTHER)
Cmu05g1053 432 Pfam COBRA-like protein 43 205 IPR006918 GO:0010215(InterPro)|GO:0016020(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu05g1053 Cmu-Chr5:9814573 Cmu06g1602 Cmu-Chr6:27226793 1.70E-138 dispersed
Cmu05g1053 Cmu-Chr5:9814573 Cmu06g1601 Cmu-Chr6:27224357 5.40E-132 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu05g1053 - - - 0.0