Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu05g1054 ATGGGGAAAGGACCATTTTCTTTTCGCCGGAGCAGTAGTCGCCGCCGCCCTAAGAAGGCGGTTCAGTCGTCACCGTCCTTATCGCCACAGCCACCTCCGCAGATTAGCACCAGTTCTCCTCCCATTAACAATAATGGGAATGGATTGGTTGGTGGTGGGGGTGGTGGGGTGGTGGGAAAAGTGAAGAAGAAGGCCGGAGGAGCTAGGCTGTGGATGCGTCTCGACAGGTGGGGACAATCGGAGCTTTTAGAGTGGGACAAGAATGCTATAATCCGACGTGCTGCAATTCCGGCTAGGGATTTGAGGATTCTTGGTCCTGTTTTCTCACACTCATCTAGCATACTCGCCAGGGAAAAGGCCATGGTCGTTAATTTAGAGTTCATAAAAGCTATAGTTACTGCTGAAGAAGTCCTATTACTTGACCCTCTTCGCCAAGAGGTTATTCCATTTGTAGATCAGCTAAGGAAGCTACTTGCTAAGACGGGTTCATCTCAACTTGAAAATGATGGGAATGTTTCGAGAGGAGGAAAGTGGTTGCCAGTTTCAGAAGCTGCTGAAGGTGAGCAGTATGAGCTCCCGTTTGAGTTTCAGGTTCTGGAAAATGCTTTGGAGGTTGTGTGCATGTACTTGGATTCCAGTGTGGCAGACCTTGAGCGAGACGCTTATCCAGTTCTGGATGAACTGGCTAGGAATGTCAGCACCAAGAATCTAGAACGTGTGAGGAGTTTGAAAAGTAATCTTACCCGTATTCTTGCACGCGTTCAGAAGGTGCGGGACGAGATAGAACATCTATTAGATGATAATGAAGATATGGCACAACTATATTTGACAAGGAAATGGATGCAGAATCAACAATTTGATGCTTTGCCGGGAGGTGTGGCTTCCAACAGCACAACTGCTATCGTTCCCCATCTTCGTCGACTTAGTTCCACCAGGAGTGGCAGTGTGGTGACCAGCAACCTTTTGGATGATAATGACATAGAGGACCTGGAGATGTTGCTCGAGGCATACTTTATGCAGTTGGATGGGACTCGTAACAGGATATTATCGGTTAGGGAATACATCGACGACACCGAGGATTATGTTAATATTCAACTTGACAACCAAAGAAATGAACTCATTCAGTTTCAGTTAACCCTGACAATTGCTTCATTTGCCATAGCGGTTGAAACCTTAATCGCCGGGTTGTTTGGTATGAACATCCCTTGTACATTGTACGAGACGGATGGGGTGTTTGGGTACTTTGTCGGAGGTACTTCAGCAGGCTGTTTATTGCTTTTCCTGCTTATTTTTGGCTTCGAAGATCTTCGTTCTTCAATCGCCACAAAGGAAAAGGATTTTTTCATATTTCTTACTATGGCAAATTCTAAAGGGTCATCCAACGTCAGAAGTTTTATGAGTTCTGGGAAACATGCACTACTCCCTCCTAAAAGTCCCTTTCCTAGTGTTTCTCCATCATATACGGAATATGTTCCTAATAGTGTAATCGGAGCAAAAGCTGTTCAGAGACCAAGAGATGGTAACAGCTACCATCAAAGAACTTCTTCCGAAAGTATTTTAATAGAGGAGCAGCCTTCTTGGCTTGATGATCTCCTCAATGAGCCAGAGACCCCTGTTCGCAGAGTTGGTCATCGACGTTCGTCGAGTGACTCCTTTGCATATACAGATGCTGCTAATGTAAATTTTGATAGTATCATGCAAGAAGAATTTAGATATGCAAATGCAATTCCTGGACACTCTTGGTTATCTCAAGAATTTGATCATCAGAGAGATGCAAGGCATGCTTCATTCTATACTGAAGCGAATATAGCAAAACAGAAGAATAGGGTGTGGGAGTCGTCTTTATCTACCATGAATAATCCCATTGCCCTTCATTCTCCTAGGGAGAACATTGGTATTCATACCTCAGGGCCACTAAACACGCCACAGGAAGCAGATGGTTTGCCTTCTACGGCAAGTGAGAAACAGGATTCAACTGAGTCTGGTTCACACGATCCAAAAGTCTCTTCTGACAGGAAAGATGCTTCTCATGGAAAATCATCTGTGTCTGATACAGAAAATAAACGCGCAAAACAGCAATTTGCTCAGCGTTCAAGGGTTCGGAAACTTCAATATATAGCAGAGCTTGAAAGGAAAGTACAAGCTTTGCAGGCAGAGGGCTCTGAAGTCTCAGCTGAGCTTGAATTTCTCAACCAACAAAATCTTATTCTTAGCATGGAAAACAAAGCCCTCAAGCAGCGGTTAGAGAATTTAGCTCAAGAGCAGCTAATTAAATACTTGGAGCAGGAAGTACTGGAGAGGGAGATTGGAAGGTTAAGAACTGTGCACCAGCAGCAACATCATCAGCAGCAGCAACCACAACAGCTACGGCCTTCTTCTAGTCATCGGCGTACTTCGAGCAAAGACCTTGACAATCAATTTGCTAACCTTTCTTTGAAGCAAAAGGATTCTGGTTCAAGTCGTGACCCGGTAACAGGTCCAGTGCGCAACGCCGCTGATCTCTTCCAGTCTTGGTACTGTACCTGTCTGTCTCTTTCTCTCCTCTCTGCCCTTTTAATTCTTTGCTGCTGTTTCCTGCCTTTTCTGGAGTTAACATCTTCATATGAATTGAATGCACCTGGTGGTCATTGCCGTTGTATTGTTTGTTCTACATGGGTTGTGTGGCCTACCGGAGGTGGTATCTTACCTGTAATGCATCATGGTAATGTGACCGGGGGGTCACAAGAGAAGGGATGCAAAATGCAAAGCTTGGGCCAATTTCGAATCCTCATTTCAAGCTTGGGCCTGGACTGCTGGATGGTATCAAACTTCAACAATTAA 2820 44.89 MGKGPFSFRRSSSRRRPKKAVQSSPSLSPQPPPQISTSSPPINNNGNGLVGGGGGGVVGKVKKKAGGARLWMRLDRWGQSELLEWDKNAIIRRAAIPARDLRILGPVFSHSSSILAREKAMVVNLEFIKAIVTAEEVLLLDPLRQEVIPFVDQLRKLLAKTGSSQLENDGNVSRGGKWLPVSEAAEGEQYELPFEFQVLENALEVVCMYLDSSVADLERDAYPVLDELARNVSTKNLERVRSLKSNLTRILARVQKVRDEIEHLLDDNEDMAQLYLTRKWMQNQQFDALPGGVASNSTTAIVPHLRRLSSTRSGSVVTSNLLDDNDIEDLEMLLEAYFMQLDGTRNRILSVREYIDDTEDYVNIQLDNQRNELIQFQLTLTIASFAIAVETLIAGLFGMNIPCTLYETDGVFGYFVGGTSAGCLLLFLLIFGFEDLRSSIATKEKDFFIFLTMANSKGSSNVRSFMSSGKHALLPPKSPFPSVSPSYTEYVPNSVIGAKAVQRPRDGNSYHQRTSSESILIEEQPSWLDDLLNEPETPVRRVGHRRSSSDSFAYTDAANVNFDSIMQEEFRYANAIPGHSWLSQEFDHQRDARHASFYTEANIAKQKNRVWESSLSTMNNPIALHSPRENIGIHTSGPLNTPQEADGLPSTASEKQDSTESGSHDPKVSSDRKDASHGKSSVSDTENKRAKQQFAQRSRVRKLQYIAELERKVQALQAEGSEVSAELEFLNQQNLILSMENKALKQRLENLAQEQLIKYLEQEVLEREIGRLRTVHQQQHHQQQQPQQLRPSSSHRRTSSKDLDNQFANLSLKQKDSGSSRDPVTGPVRNAADLFQSWYCTCLSLSLLSALLILCCCFLPFLELTSSYELNAPGGHCRCIVCSTWVVWPTGGGILPVMHHGNVTGGSQEKGCKMQSLGQFRILISSLGLDCWMVSNFNN 939
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 9822365 9844502 - CmPI595203_05g010540.1 Cmu05g1054 415968
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu05g1054 939 PANTHER BASIC-LEUCINE ZIPPER (BZIP) TRANSCRIPTION FACTOR FAMILY PROTEIN-RELATED 461 813 IPR044797 -
Cmu05g1054 939 Coils Coil 699 754 - -
Cmu05g1054 939 Pfam CorA-like Mg2+ transporter protein 333 431 IPR002523 GO:0016020(InterPro)|GO:0030001(InterPro)|GO:0046873(InterPro)|GO:0055085(InterPro)
Cmu05g1054 939 Coils Coil 240 274 - -
Cmu05g1054 939 Pfam Magnesium transporter MRS2-like 84 286 - -
Cmu05g1054 939 MobiDBLite consensus disorder prediction 776 794 - -
Cmu05g1054 939 MobiDBLite consensus disorder prediction 633 657 - -
Cmu05g1054 939 Gene3D Magnesium transport protein CorA, transmembrane region 148 373 - -
Cmu05g1054 939 MobiDBLite consensus disorder prediction 775 800 - -
Cmu05g1054 939 MobiDBLite consensus disorder prediction 627 697 - -
Cmu05g1054 939 CDD bZIP_plant_RF2 688 734 IPR044759 GO:0003700(InterPro)|GO:0006355(InterPro)
Cmu05g1054 939 CDD Mrs2_Mfm1p-like 71 423 IPR039204 -
Cmu05g1054 939 SMART brlzneu 684 743 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Cmu05g1054 939 MobiDBLite consensus disorder prediction 658 693 - -
Cmu05g1054 939 FunFam Magnesium transporter MRS2-1 59 142 - -
Cmu05g1054 939 Gene3D - 59 142 - -
Cmu05g1054 939 MobiDBLite consensus disorder prediction 1 55 - -
Cmu05g1054 939 SUPERFAMILY Leucine zipper domain 695 737 IPR046347 GO:0003700(InterPro)|GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu02g0026 Cmu-Chr2:303931 Cmu05g1054 Cmu-Chr5:9822365 7.00E-179 dispersed
Cmu05g1054 Cmu-Chr5:9822365 Cmu11g1354 Cmu-Chr11:25735093 2.00E-99 dispersed
Cmu05g1054 Cmu-Chr5:9822365 Cmu07g0122 Cmu-Chr7:1073170 2.50E-81 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu05g1054 K16075 - csv:101203496 709.138