Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu05g1054 ATGGGGAAAGGACCATTTTCTTTTCGCCGGAGCAGTAGTCGCCGCCGCCCTAAGAAGGCGGTTCAGTCGTCACCGTCCTTATCGCCACAGCCACCTCCGCAGATTAGCACCAGTTCTCCTCCCATTAACAATAATGGGAATGGATTGGTTGGTGGTGGGGGTGGTGGGGTGGTGGGAAAAGTGAAGAAGAAGGCCGGAGGAGCTAGGCTGTGGATGCGTCTCGACAGGTGGGGACAATCGGAGCTTTTAGAGTGGGACAAGAATGCTATAATCCGACGTGCTGCAATTCCGGCTAGGGATTTGAGGATTCTTGGTCCTGTTTTCTCACACTCATCTAGCATACTCGCCAGGGAAAAGGCCATGGTCGTTAATTTAGAGTTCATAAAAGCTATAGTTACTGCTGAAGAAGTCCTATTACTTGACCCTCTTCGCCAAGAGGTTATTCCATTTGTAGATCAGCTAAGGAAGCTACTTGCTAAGACGGGTTCATCTCAACTTGAAAATGATGGGAATGTTTCGAGAGGAGGAAAGTGGTTGCCAGTTTCAGAAGCTGCTGAAGGTGAGCAGTATGAGCTCCCGTTTGAGTTTCAGGTTCTGGAAAATGCTTTGGAGGTTGTGTGCATGTACTTGGATTCCAGTGTGGCAGACCTTGAGCGAGACGCTTATCCAGTTCTGGATGAACTGGCTAGGAATGTCAGCACCAAGAATCTAGAACGTGTGAGGAGTTTGAAAAGTAATCTTACCCGTATTCTTGCACGCGTTCAGAAGGTGCGGGACGAGATAGAACATCTATTAGATGATAATGAAGATATGGCACAACTATATTTGACAAGGAAATGGATGCAGAATCAACAATTTGATGCTTTGCCGGGAGGTGTGGCTTCCAACAGCACAACTGCTATCGTTCCCCATCTTCGTCGACTTAGTTCCACCAGGAGTGGCAGTGTGGTGACCAGCAACCTTTTGGATGATAATGACATAGAGGACCTGGAGATGTTGCTCGAGGCATACTTTATGCAGTTGGATGGGACTCGTAACAGGATATTATCGGTTAGGGAATACATCGACGACACCGAGGATTATGTTAATATTCAACTTGACAACCAAAGAAATGAACTCATTCAGTTTCAGTTAACCCTGACAATTGCTTCATTTGCCATAGCGGTTGAAACCTTAATCGCCGGGTTGTTTGGTATGAACATCCCTTGTACATTGTACGAGACGGATGGGGTGTTTGGGTACTTTGTCGGAGGTACTTCAGCAGGCTGTTTATTGCTTTTCCTGCTTATTTTTGGCTTCGAAGATCTTCGTTCTTCAATCGCCACAAAGGAAAAGGATTTTTTCATATTTCTTACTATGGCAAATTCTAAAGGGTCATCCAACGTCAGAAGTTTTATGAGTTCTGGGAAACATGCACTACTCCCTCCTAAAAGTCCCTTTCCTAGTGTTTCTCCATCATATACGGAATATGTTCCTAATAGTGTAATCGGAGCAAAAGCTGTTCAGAGACCAAGAGATGGTAACAGCTACCATCAAAGAACTTCTTCCGAAAGTATTTTAATAGAGGAGCAGCCTTCTTGGCTTGATGATCTCCTCAATGAGCCAGAGACCCCTGTTCGCAGAGTTGGTCATCGACGTTCGTCGAGTGACTCCTTTGCATATACAGATGCTGCTAATGTAAATTTTGATAGTATCATGCAAGAAGAATTTAGATATGCAAATGCAATTCCTGGACACTCTTGGTTATCTCAAGAATTTGATCATCAGAGAGATGCAAGGCATGCTTCATTCTATACTGAAGCGAATATAGCAAAACAGAAGAATAGGGTGTGGGAGTCGTCTTTATCTACCATGAATAATCCCATTGCCCTTCATTCTCCTAGGGAGAACATTGGTATTCATACCTCAGGGCCACTAAACACGCCACAGGAAGCAGATGGTTTGCCTTCTACGGCAAGTGAGAAACAGGATTCAACTGAGTCTGGTTCACACGATCCAAAAGTCTCTTCTGACAGGAAAGATGCTTCTCATGGAAAATCATCTGTGTCTGATACAGAAAATAAACGCGCAAAACAGCAATTTGCTCAGCGTTCAAGGGTTCGGAAACTTCAATATATAGCAGAGCTTGAAAGGAAAGTACAAGCTTTGCAGGCAGAGGGCTCTGAAGTCTCAGCTGAGCTTGAATTTCTCAACCAACAAAATCTTATTCTTAGCATGGAAAACAAAGCCCTCAAGCAGCGGTTAGAGAATTTAGCTCAAGAGCAGCTAATTAAATACTTGGAGCAGGAAGTACTGGAGAGGGAGATTGGAAGGTTAAGAACTGTGCACCAGCAGCAACATCATCAGCAGCAGCAACCACAACAGCTACGGCCTTCTTCTAGTCATCGGCGTACTTCGAGCAAAGACCTTGACAATCAATTTGCTAACCTTTCTTTGAAGCAAAAGGATTCTGGTTCAAGTCGTGACCCGGTAACAGGTCCAGTGCGCAACGCCGCTGATCTCTTCCAGTCTTGGTACTGTACCTGTCTGTCTCTTTCTCTCCTCTCTGCCCTTTTAATTCTTTGCTGCTGTTTCCTGCCTTTTCTGGAGTTAACATCTTCATATGAATTGAATGCACCTGGTGGTCATTGCCGTTGTATTGTTTGTTCTACATGGGTTGTGTGGCCTACCGGAGGTGGTATCTTACCTGTAATGCATCATGGTAATGTGACCGGGGGGTCACAAGAGAAGGGATGCAAAATGCAAAGCTTGGGCCAATTTCGAATCCTCATTTCAAGCTTGGGCCTGGACTGCTGGATGGTATCAAACTTCAACAATTAA 2820 44.89 MGKGPFSFRRSSSRRRPKKAVQSSPSLSPQPPPQISTSSPPINNNGNGLVGGGGGGVVGKVKKKAGGARLWMRLDRWGQSELLEWDKNAIIRRAAIPARDLRILGPVFSHSSSILAREKAMVVNLEFIKAIVTAEEVLLLDPLRQEVIPFVDQLRKLLAKTGSSQLENDGNVSRGGKWLPVSEAAEGEQYELPFEFQVLENALEVVCMYLDSSVADLERDAYPVLDELARNVSTKNLERVRSLKSNLTRILARVQKVRDEIEHLLDDNEDMAQLYLTRKWMQNQQFDALPGGVASNSTTAIVPHLRRLSSTRSGSVVTSNLLDDNDIEDLEMLLEAYFMQLDGTRNRILSVREYIDDTEDYVNIQLDNQRNELIQFQLTLTIASFAIAVETLIAGLFGMNIPCTLYETDGVFGYFVGGTSAGCLLLFLLIFGFEDLRSSIATKEKDFFIFLTMANSKGSSNVRSFMSSGKHALLPPKSPFPSVSPSYTEYVPNSVIGAKAVQRPRDGNSYHQRTSSESILIEEQPSWLDDLLNEPETPVRRVGHRRSSSDSFAYTDAANVNFDSIMQEEFRYANAIPGHSWLSQEFDHQRDARHASFYTEANIAKQKNRVWESSLSTMNNPIALHSPRENIGIHTSGPLNTPQEADGLPSTASEKQDSTESGSHDPKVSSDRKDASHGKSSVSDTENKRAKQQFAQRSRVRKLQYIAELERKVQALQAEGSEVSAELEFLNQQNLILSMENKALKQRLENLAQEQLIKYLEQEVLEREIGRLRTVHQQQHHQQQQPQQLRPSSSHRRTSSKDLDNQFANLSLKQKDSGSSRDPVTGPVRNAADLFQSWYCTCLSLSLLSALLILCCCFLPFLELTSSYELNAPGGHCRCIVCSTWVVWPTGGGILPVMHHGNVTGGSQEKGCKMQSLGQFRILISSLGLDCWMVSNFNN 939
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 9822365 9844502 - CmPI595203_05g010540.1 Cmu05g1054 415968

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmu05g1054 939 PANTHER BASIC-LEUCINE ZIPPER (BZIP) TRANSCRIPTION FACTOR FAMILY PROTEIN-RELATED 461 813 IPR044797 -
Cmu05g1054 939 Coils Coil 699 754 - -
Cmu05g1054 939 Pfam CorA-like Mg2+ transporter protein 333 431 IPR002523 GO:0016020(InterPro)|GO:0030001(InterPro)|GO:0046873(InterPro)|GO:0055085(InterPro)
Cmu05g1054 939 Coils Coil 240 274 - -
Cmu05g1054 939 Pfam Magnesium transporter MRS2-like 84 286 - -
Cmu05g1054 939 MobiDBLite consensus disorder prediction 776 794 - -
Cmu05g1054 939 MobiDBLite consensus disorder prediction 633 657 - -
Cmu05g1054 939 Gene3D Magnesium transport protein CorA, transmembrane region 148 373 - -
Cmu05g1054 939 MobiDBLite consensus disorder prediction 775 800 - -
Cmu05g1054 939 MobiDBLite consensus disorder prediction 627 697 - -
Cmu05g1054 939 CDD bZIP_plant_RF2 688 734 IPR044759 GO:0003700(InterPro)|GO:0006355(InterPro)
Cmu05g1054 939 CDD Mrs2_Mfm1p-like 71 423 IPR039204 -
Cmu05g1054 939 SMART brlzneu 684 743 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Cmu05g1054 939 MobiDBLite consensus disorder prediction 658 693 - -
Cmu05g1054 939 FunFam Magnesium transporter MRS2-1 59 142 - -
Cmu05g1054 939 Gene3D - 59 142 - -
Cmu05g1054 939 MobiDBLite consensus disorder prediction 1 55 - -
Cmu05g1054 939 SUPERFAMILY Leucine zipper domain 695 737 IPR046347 GO:0003700(InterPro)|GO:0006355(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu05g1054 K16075 - - csv:101203496 709.138
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu02g0026 Cmu-Chr2:303931 Cmu05g1054 Cmu-Chr5:9822365 7.00E-179 dispersed
Cmu05g1054 Cmu-Chr5:9822365 Cmu11g1354 Cmu-Chr11:25735093 2.00E-99 dispersed
Cmu05g1054 Cmu-Chr5:9822365 Cmu07g0122 Cmu-Chr7:1073170 2.50E-81 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cmu10g2053 . 1 447 MRS2 Gene Family AT1G16010 85.2 4.0e-207 717.6
Cmu08g0986 . 6 380 MRS2 Gene Family AT1G16010 52.1 2.8e-107 386.0
Cmu06g0647 . 1 365 MRS2 Gene Family AT5G64560 81.0 1.3e-158 556.2
Cmu07g0122 . 788 1159 MRS2 Gene Family AT5G64560 69.2 6.2e-132 467.6
Cmu02g0734 . 14 495 MRS2 Gene Family AT3G19640 64.4 3.0e-155 545.4
Cmu05g1054 . 59 433 MRS2 Gene Family AT3G58970 69.6 6.3e-136 481.1
Cmu02g0026 . 59 386 MRS2 Gene Family AT3G58970 69.9 4.2e-116 415.2
Cmu08g0986 . 6 380 MRS2 Gene Family AT2G03620 68.1 5.5e-137 484.6
Cmu10g2053 . 13 447 MRS2 Gene Family AT2G03620 53.0 1.2e-112 403.7
Cmu06g0647 . 1 327 MRS2 Gene Family AT5G09690 76.1 3.9e-127 451.4
Cmu07g0122 . 788 1121 MRS2 Gene Family AT5G09690 64.2 1.1e-108 390.2
Cmu10g2053 . 40 383 MRS2 Gene Family AT5G09690 50.3 5.8e-78 288.1
Cmu06g0647 . 23 287 MRS2 Gene Family AT5G09720 68.3 1.7e-89 326.2
Cmu07g0122 . 823 1081 MRS2 Gene Family AT5G09720 62.0 2.2e-76 282.7
Cmu10g2053 . 1 447 MRS2 Gene Family AT1G80900 83.2 7.4e-201 696.8
Cmu08g0986 . 6 380 MRS2 Gene Family AT1G80900 54.0 5.3e-106 381.7
Cmu01g1362 . 16 424 MRS2 Gene Family AT5G22830 68.4 8.6e-144 507.3
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003636 0 2 1 1 1 2 2 2 2 1 2 1 2 1 1 2 2 2 2 1 1 1 2 2 1 1 1 5 2 1 47