Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cmu05g1056 | ATGAAGTCGATCAAATCCTCCGGCTTAAACATGGAGCAACCCATTCGTGGATCCTTTGATGAAGGCCAATACAGAAGCCGAAGCATTCACTCCGACGCCGCTAGAATCGATTTGGATAAGAAGGTGAAGAAGGTTCGAGGAAGAGGCAAAACGAAGAACTCGTGGAAACAAGATAGCGAGAAGAGTTTTAAAGAAAAACGCACAATTGAGAGTCTATTTGAGAAGGATTTTGTGGAGAGGCTTCGAAACAGAATCCAAATCCAGACAAGATTTCATTTCGAAGATACTGAAAAGTACTTACCCAGTGATGAATTGGGAACAATTATTCGAAGTGACCAAGCAAGGATGGCGGAGACAATATGGGAAGAAAGCGTAATTCGCCTGGCGCCGCTGTATAGAGCGGCGCTAATGGGCGAATGGGAGATAGCAGAAGCCATTTTCAAGCAAGATTCTAGAGCAATCACGTCGGAGATCAGCCTCTTGAACGAGACTGCTCTCCATGTAGCGGTCGGCACAGGCGGCAATTTGGGATTTGTTGAGAAGCTGGTGAGCTTAATGTGGAAACGATCACTGCCGCTTACACAGGAGGATTTATATGGGAATACTGCGCTTGCTGTTGCCGCCATTGTTGGAAATGTGAAAGCTGCAGAAATCTTGGTCGGGAAAGATGAGATGTTGCCGGCGATGAGAAACCGGGTGAATTACTCGCCGTTGCATCTGGCGGCGAAATATGGGCACAGAGATATGGTTTTGTATCTTCTAGGCGTAACAAAGGACGAAGGGATATTCACCGGTCAATCTGGTGCTAGGCTTCTCAATCTTCTCATTTCATTTGATATCTATGATGTAGCTCTTGATATATTAAATCAACAGCCGAAGTTGGCGGTGGAACAAGATCAATACGGATTCACAGCTCTACAAATGTTGGCTGAAAAACCAGATGTGTTTGAGAGTGGAACAACTCAGCTTGGGCGTTGCCGACGCATCCTTCATCCTCGCTCCCGTGTTGCTGTGGAAGTCTTCGATGCTTCTGATCATCTGCCCATGCAACAAAGTGATATCGAAAGTCCTCCTGAAATCTCAAACAATGCAGGAGTGTTGATGAAGAATGTTTATAGGAAAAAGCATAATAAGAAGCATGAGGAAGCATCTGCAAGAATGGGGAGTGTTGAAGTTGCCATAGCAATTGTAAGAGTTTATCCTTATTCAATTTGGTTCCGCGATAGCCGTGAATGCAATATTTTTCAGATCGCTGTTCTTCATCGTCAACACAAGATTTATAATCTTATATATCAAATGACTTCACACAAGTATTTTGCAGCAGCTTTTCTTGACAATAATGATAACAACATCTTGCATTTAGCTGGTGAGCTTGTTCCATCTCATTCAATCTCTGGTGCAGCTTTGCAATTGCAACGAGAATTGCAGTGGTTTAAGGAAGTTGAAAGATTAGTGCTACCATCTTACAAAAGCATGACAAACAAAGATAACAAAACACCAAGAATGGTATTTAGTGAAGAACATGAAGAGCTAGTTCAGCAAGGTGAAAAATGGATGAAGAACACTGCTTCATCGTACACCGTTGTTGCGGCGCTCATTGCAACGGTTGCATTTGCAGCAATTTTCACTGTACCTGGTGGCAACGACAATGATCAAGGCATCCCTATTCTCATTAACCACAAATTCTTCATGGTTTTTGTAGCAGCAGATGCATTAGCATTAATCACTTCATCTGCTTCAGTAATAATGTTTTTAGGAATACTCACTTCGCGCTACGCAGAAGACGATTTTCTCAAGGTGTTACCTTCGAGATTGATTATCGGTCTCGTCTCGTTGTTCATCTCTATATTATCCATGGTAGCAGCCTTCAGTGCATCCCTTTGCCTAGTTCTTGTTCATCAACTGAGATGGGTGTGGGCTCCAATGATAGTATTTGCCTTGGTTCCTGTTATCTTATTTGCCATGTTGCAATTTCCACTTTTGGTGCAAATGACATCTTCCACATATGGGCCTAGCATTTTTGGTTTGCAAAGTTCAATTCTAAGGAAGACTTTGGTGATGGACTCCCTCCTGGTTCCAAACTATATGATTTGTGTTAGAACAATTTTGCACATAGTTGAGGAAGTTTGTAGATGGTTCTCTCCTCTCATTGGTTCCTTCAAGCCGAATGCAAATGTGATTGTCGTTATGAACCTATTCCCCACTTTTCGGCTCTCATTATCTCGCCGCCGCTCCTTCTCTTTGGTTGCTCTAATTCGAAGCTTGCGAAAGAGCTTCAGAGTGGTTTTAGATCCGTGTTCTGTGATCGACGTTGAGAGAGAGAATGGCTTCTCGTTTCTGGACCCAGGTATTGCGTTCAGTCTAAACGGTGGTGGCAGTGGTTCTGATTCTGAAGCGGAGGAGAGTGACTATGGTGAAGAGCTTGACGACGTACAGGTTGATCCTGGCTCCCAACCGAACAGAAGCAGATATCTGCAAGGGAATGCCAGTGACAGCGAAGATTCTGAGGATAAGAAGCGTACTGTCAGGTCGGCTAAAGATAAGCGTTTTGAGGAGATGTCTGCTACAGTGGATCAGATGAAAAATGCAATGAAGATCAATGACTGGGTTAGCCTGCAGGAGAGTTTTGATAAAATAAATAAGCAGCTTGAGAAAGTCATGCGTGTTACTGAGTCTGAGAAGGTGCCGACTCTTTATATTAAAGCACTTGTGATGCTAGAGGACTTCCTAAATGAAGCCATGGCCAATAAGGAAGCAAAGAAGAAAATGAGTACTAGCAATTCTAAGGCCTTAAATTCAATGAAACAGAAGCTAAAGAAGAACAACAAGCAATATGAAGAGGTAATTGCCAAGTATAGGGAGAATCCTGAGATTGAGGAAGAAAAGGCTGATGAGCTGGAGGAGGAGGAGGAGGATGACGATGAATCTGAATATGAGGATGATCCTTCTAAAATCATGTCAGATTCAGAGCCAGAGCCAGATGTAGATGAAGAAGAAGATCTAGATGATCCAAGTCAAAACTGGGAGAAGAAGAAGAGCAAAAAAAATAAGCTCATGGATAAGCAGTTTATGAAGGATCCTAGTGAGATCACATGGGACACTGTGAACAAGAAATTTAAGGAGGTTGTGGCTGCTCGGGGTAGGAAGGGAACTGGAAGATTTGAGCAGGTTGAACAGCTTACATTCTTAACAAAAGTTGCTAAGACCCCTGCACAAAAGCTTGAGATTTTGTTCAGTGTTGTATCTGCTCAATTTGATGTTAATCCAGGTCTCAGTGGGCATATGCCTATCAGTGTGTGGAAGAAGTGTGTGCAGAACATGCTTTCTATAATTGACATTCTTGTGCAGAATTCCAACATTGTGGTGGATGATATGGTTGAACCTGATGAGAATGAAAGCCAGAAGCCAGCAGACTATAAGGGAACAATACGTGTTTGGGGAAACTTGGTTGCTTTTGTTGAGAGGATTGACACTGAGTTTTTTAAGAGTTTGCAGTGTATTGACCCACATACACGTGAGTATGTTGAAAGACTCAGAGATGAGCCAATGTTTATGGTTCTTGCTCAGAATGTCCAAGCATATTTGGAACGAGTTGGGGATTACAAAGCAGCTTCAAAAGTTGCCCTGAGGCGTGTTGAACTGATCTATTACAAACCACAAGAGGTTTATGATGCCATGAGAAAGCTTGCAGAGCTGTCAGAAGATGGAGATAGTGGAGATGCAAGTGAGGAGGCTAAAGTGGTTGAAGAGAGCAGGGGCCCTGCTGCATTTATTGTCACTCCAGAGCTTGTACCTCGTAAACCCACCTTTCCAGAGAGTAGTAGGGCTTTTATGGACATTCTGGTAACCCTTATCTACCAATATGGAGATGAGCGCACTAAAGCACGAGCTATGCTCTGCGATATTTATCACCACGCTCTCTTGGATGAATTTTATATTTCTCGTGACTTGTTACTGATGAGTCACTTACAGGATAGTATTCAACATTTGGACATTTCAACGCAGATCCTTTTCAATAGGGCAATGGCTCAACTTGGTTTATGTGGCTTTCGGGTTGGCCTGATTAGTGAAGGACATGGCTGTCTTTCAGAATTATATTCTGGTGGAAGGGTGAAGGAATTGCTCGCTCAAGGTGTCTCACAAAGCCGATACCATGAAAAGACTCCAGAACAGGAAAGGCTTGAAAGAAGAAGGCAGATGCCATACCACATGCACATAAATCTTGAGCTCCTGGAGGCTGTGCATTTAATATGTGCTATGCTGCTGGAAGTACCCAACATGGCAGGCAATGTTCATGATGCCAAGCGCAAGGTTATTAGTAAGAACTTTAGACGGTTACTTGAGGTGAGTGAGAGACAAACGTTTACGGGTCCTCCTGAGAATGTCAGAGATCATGTAATGGCTGCTACTCGGGCCCTTCGCAAGGGTGATTTCCAGAAGGCTTTTGATGTCATTGCATCTCTAGATGTATGGAAGCTACTTAGGAATCGTGATGAAGTGCTGGAAATGGTAAAAGGGAAAATCAAGGAGGAGGCTTTGAGGACTTACCTTCTCACATACTCTTCGTCCTACGATTCTCTGAGTTCGGACCAACTCACCCAAATGTTCGACCTTGCAGAGGGTCAAACACACAGGATTGTGAGCAAGATGATGATCAATGAGGAGCTCCATGCAAGTTGGGATCAGCCAAGCGGGTGTGTCATCTTCCACGATGTTACACACACCCGATTACAAGGCCTGGCATTCCAACTGGCTGATAAGTTGTCAATCCTTGCTGAAAGTAACGAGAGAGCAGTTGAGGCAAGAATAGGAGGATTAGATTTACCAATGAGGCGAAGAGACAACCAAGAATATGCTGCTGGAGGGGCTGTAGGAGGGAGTAGCAGGTGGCCAGATAACATGTCGTATAATCAAGGAAGGCATGGTGGTCCTAGTTCGCGTGCAGGATATAGCAGCGGTGGGCGAGGCCAAGGTGGGGCTGGTGGATATTCTAGAGACCGAATGGGTCAGTCTCGAGGAGGCAATGCAGGATATCAAAGCACTCGTTATCAAGACACCGCATATGGATCAGGGAGGACTGCTTATCAGTCGGGTTCTGCCCGAGGATCCCAGATGGATGCTTCAGCTCGCATGTCTGAAGTGTCTGCTTACTACATAGTGCCGCGAAAGTCATCAGTGACTTTTGCAGGCCGACTGCCGTGGAACCATTGGCAATCTTAG | 5220 | 44.18 | MKSIKSSGLNMEQPIRGSFDEGQYRSRSIHSDAARIDLDKKVKKVRGRGKTKNSWKQDSEKSFKEKRTIESLFEKDFVERLRNRIQIQTRFHFEDTEKYLPSDELGTIIRSDQARMAETIWEESVIRLAPLYRAALMGEWEIAEAIFKQDSRAITSEISLLNETALHVAVGTGGNLGFVEKLVSLMWKRSLPLTQEDLYGNTALAVAAIVGNVKAAEILVGKDEMLPAMRNRVNYSPLHLAAKYGHRDMVLYLLGVTKDEGIFTGQSGARLLNLLISFDIYDVALDILNQQPKLAVEQDQYGFTALQMLAEKPDVFESGTTQLGRCRRILHPRSRVAVEVFDASDHLPMQQSDIESPPEISNNAGVLMKNVYRKKHNKKHEEASARMGSVEVAIAIVRVYPYSIWFRDSRECNIFQIAVLHRQHKIYNLIYQMTSHKYFAAAFLDNNDNNILHLAGELVPSHSISGAALQLQRELQWFKEVERLVLPSYKSMTNKDNKTPRMVFSEEHEELVQQGEKWMKNTASSYTVVAALIATVAFAAIFTVPGGNDNDQGIPILINHKFFMVFVAADALALITSSASVIMFLGILTSRYAEDDFLKVLPSRLIIGLVSLFISILSMVAAFSASLCLVLVHQLRWVWAPMIVFALVPVILFAMLQFPLLVQMTSSTYGPSIFGLQSSILRKTLVMDSLLVPNYMICVRTILHIVEEVCRWFSPLIGSFKPNANVIVVMNLFPTFRLSLSRRRSFSLVALIRSLRKSFRVVLDPCSVIDVERENGFSFLDPGIAFSLNGGGSGSDSEAEESDYGEELDDVQVDPGSQPNRSRYLQGNASDSEDSEDKKRTVRSAKDKRFEEMSATVDQMKNAMKINDWVSLQESFDKINKQLEKVMRVTESEKVPTLYIKALVMLEDFLNEAMANKEAKKKMSTSNSKALNSMKQKLKKNNKQYEEVIAKYRENPEIEEEKADELEEEEEDDDESEYEDDPSKIMSDSEPEPDVDEEEDLDDPSQNWEKKKSKKNKLMDKQFMKDPSEITWDTVNKKFKEVVAARGRKGTGRFEQVEQLTFLTKVAKTPAQKLEILFSVVSAQFDVNPGLSGHMPISVWKKCVQNMLSIIDILVQNSNIVVDDMVEPDENESQKPADYKGTIRVWGNLVAFVERIDTEFFKSLQCIDPHTREYVERLRDEPMFMVLAQNVQAYLERVGDYKAASKVALRRVELIYYKPQEVYDAMRKLAELSEDGDSGDASEEAKVVEESRGPAAFIVTPELVPRKPTFPESSRAFMDILVTLIYQYGDERTKARAMLCDIYHHALLDEFYISRDLLLMSHLQDSIQHLDISTQILFNRAMAQLGLCGFRVGLISEGHGCLSELYSGGRVKELLAQGVSQSRYHEKTPEQERLERRRQMPYHMHINLELLEAVHLICAMLLEVPNMAGNVHDAKRKVISKNFRRLLEVSERQTFTGPPENVRDHVMAATRALRKGDFQKAFDVIASLDVWKLLRNRDEVLEMVKGKIKEEALRTYLLTYSSSYDSLSSDQLTQMFDLAEGQTHRIVSKMMINEELHASWDQPSGCVIFHDVTHTRLQGLAFQLADKLSILAESNERAVEARIGGLDLPMRRRDNQEYAAGGAVGGSSRWPDNMSYNQGRHGGPSSRAGYSSGGRGQGGAGGYSRDRMGQSRGGNAGYQSTRYQDTAYGSGRTAYQSGSARGSQMDASARMSEVSAYYIVPRKSSVTFAGRLPWNHWQS | 1739 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
5 | 9864380 | 9886726 | - | CmPI595203_05g010560.1 | Cmu05g1056 | 415970 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cmu05g1056 | 1739 | MobiDBLite | consensus disorder prediction | 960 | 981 | - | - | |
Cmu05g1056 | 1739 | MobiDBLite | consensus disorder prediction | 790 | 850 | - | - | |
Cmu05g1056 | 1739 | SUPERFAMILY | Ankyrin repeat | 130 | 434 | IPR036770 | - | |
Cmu05g1056 | 1739 | MobiDBLite | consensus disorder prediction | 815 | 829 | - | - | |
Cmu05g1056 | 1739 | Coils | Coil | 928 | 969 | - | - | |
Cmu05g1056 | 1739 | MobiDBLite | consensus disorder prediction | 40 | 60 | - | - | |
Cmu05g1056 | 1739 | MobiDBLite | consensus disorder prediction | 939 | 959 | - | - | |
Cmu05g1056 | 1739 | Hamap | Eukaryotic translation initiation factor 3 subunit C [EIF3C]. | 785 | 1649 | IPR027516 | GO:0003723(InterPro)|GO:0003743(InterPro)|GO:0005852(InterPro)|GO:0006413(InterPro)|GO:0031369(InterPro) | |
Cmu05g1056 | 1739 | Pfam | Domain of unknown function | 516 | 630 | IPR026961 | - | |
Cmu05g1056 | 1739 | MobiDBLite | consensus disorder prediction | 1620 | 1684 | - | - | |
Cmu05g1056 | 1739 | ProSiteProfiles | Ankyrin repeat region circular profile. | 233 | 254 | - | - | |
Cmu05g1056 | 1739 | Pfam | Ankyrin repeats (3 copies) | 166 | 254 | IPR002110 | GO:0005515(InterPro) | |
Cmu05g1056 | 1739 | SUPERFAMILY | Winged helix DNA-binding domain | 1498 | 1573 | IPR036390 | - | |
Cmu05g1056 | 1739 | SMART | motif in proteasome subunits, Int-6, Nip-1 and TRIP-15 | 1503 | 1591 | IPR000717 | - | |
Cmu05g1056 | 1739 | MobiDBLite | consensus disorder prediction | 1 | 26 | - | - | |
Cmu05g1056 | 1739 | ProSiteProfiles | PCI domain profile. | 1402 | 1574 | IPR000717 | - | |
Cmu05g1056 | 1739 | Pfam | PCI domain | 1499 | 1571 | IPR000717 | - | |
Cmu05g1056 | 1739 | SMART | ANK_2a | 161 | 191 | IPR002110 | GO:0005515(InterPro) | |
Cmu05g1056 | 1739 | SMART | ANK_2a | 233 | 262 | IPR002110 | GO:0005515(InterPro) | |
Cmu05g1056 | 1739 | SMART | ANK_2a | 199 | 228 | IPR002110 | GO:0005515(InterPro) | |
Cmu05g1056 | 1739 | PANTHER | EUKARYOTIC TRANSLATION INITATION FACTOR 3, SUBUNIT 8 EIF3S8 -RELATED | 794 | 1674 | IPR027516 | GO:0003723(InterPro)|GO:0003743(PANTHER)|GO:0003743(InterPro)|GO:0005852(InterPro)|GO:0005852(PANTHER)|GO:0006413(PANTHER)|GO:0006413(InterPro)|GO:0031369(InterPro)|GO:0031369(PANTHER) | |
Cmu05g1056 | 1739 | MobiDBLite | consensus disorder prediction | 1630 | 1645 | - | - | |
Cmu05g1056 | 1739 | MobiDBLite | consensus disorder prediction | 920 | 1016 | - | - | |
Cmu05g1056 | 1739 | Pfam | Eukaryotic translation initiation factor 3 subunit 8 N-terminus | 829 | 1434 | IPR008905 | GO:0003743(InterPro)|GO:0005852(InterPro)|GO:0006413(InterPro)|GO:0031369(InterPro) | |
Cmu05g1056 | 1739 | Gene3D | - | 112 | 459 | IPR036770 | - | |
Cmu05g1056 | 1739 | ProSiteProfiles | Ankyrin repeat profile. | 233 | 254 | IPR002110 | GO:0005515(InterPro) | |
Cmu05g1056 | 1739 | MobiDBLite | consensus disorder prediction | 830 | 850 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cmu05g1056 | Cmu-Chr5:9864380 | Cmu07g0110 | Cmu-Chr7:915902 | 3.30E-18 | dispersed | |
Cmu05g1056 | Cmu-Chr5:9864380 | Cmu05g1057 | Cmu-Chr5:9895946 | 9.30E-223 | tandem |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cmu05g1056 | K03252 | - | csv:101203990 | 1624.37 |