Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu05g1069 ATGCAAAATCAGGAAACGATGAAGATATTCAGTAGTTTCCTTCTTTGTTTACTCTCTGTAGTAACTGTAACTTCAGCAGCCACTCCAATCGCAAACCCCATCTGCCCAATGGACCTCAACTATGTCCTCAGAATCCCTTGGAATGCCACTGATTGTCGGAACCCTTTCTTCCAGGCCACTGCCAAATCCGCCATGAATGATACCTCCAAAATCCCTTGTTGTCAAACCCTTTTGTCCTTGTTTGGAATTGCTTTGGCCCAACACCTTAAAGAGACTTCTCTTTTCAACCTCCCAGACCTCGCAACCTCCAATTCTTGCCTTCGCGATTACCAATCGAAGCTCTCCTCGCTCTCCCTTCCCGGCGACCTTGTTTCCAATTGCTTTAATCCTTTGCAATTTGTGATCTCTGCTAATGTCTGTGCTGGTATTCAAACTACTCGAGATTGGGTTTCGAAACTTGGCCCTAACTCCCCGCTCGATTCTGGGTGTCGGTCGGAACTTGTTGGTCCTGGTTGTGATGCTTGTCTCGCCGCTGGTCTCAAAGTTCAAGCGACTTTGACTCGAATTGATGGTAATAAATCTCATTCTATGGATTGTTTTTACTTTGCTGTTCTTTATGCTGCTGGCATTGTGAATGAGTCTGGCCCTGAGGGCGACAGTGCGTTGGGTTGCATATTTAATTTGCCATTGAGTACTCAAAAGGATTCCAAAAGTAATCATTCTGCTCTAGTTTATGGCCTTACTGCTGCTGCTGTTGGAATTTTGGTTGTTTTTGTTCTTTTGGGAATAGGATTTTGGTTTTACAAATGGAAAAAATTGGCTCAGAAGTCTAGTTTAGAGTTTGATGTGGAGCTGGATGAACAAGGGTCTAGGCCACATGCAAGGCCAAACACTGGATCAATTTGGTTCAAGATTCAGGAGCTTGAGAAGGCAACTAATAACTTTTCTTCAAAAAACTTCATTGGGAGAGGTGGGTTTGGTTTAGTTTACAAAGGGACATTACCTGATGGAAGTATGGTGGCAGTCAAGAAAGTAATTGAATCAGATTTTCAAGGCAATGCCGAGTTTTGCAATGAGGTTGAAATAATCAGTAATCTAAAGCATAGGAATCTTGTTCCGCTTCGTGGTTGTTGCGTGATCGATGGGGATGACGGTCATGATGAGGGAGCAAGTGAGAGATACCTTGTTTACGATTACATGCCAAATGGAAATCTCGATGACTATTTGTTCCCTATACCATTTGATGAAGTTGGAACTGTAAAAAAATCATTGACATGGCCTCAAAGGAAGAATATTATCTTGGACGTGGCAAAGGGCTTAGCCTATCTGCACTATGGAGTGAAACCTGCCATATATCATAGAGATATCAAGGCGACGAATATATTGCTAGATGCAGACATGAGAGCAAGAGTGGCAGATTTCGGGCTCGCCAAACAAAGCAGGGAAGGACAGTCTCATCTAACGACTCGAGTTGCAGGTACTCATGGGTATTTAGCCCCTGAATATGCGCTTTATGGACAACTAACTGAGAAGAGTGATGTTTATAGCTTTGGAGTAGTTGTTTTGGAGATAATGTGTGGGAGAAAAGCTCTTGATTTCTCTCTGTCGTCATCACCGCGTGCATTCCTGATCACAGATTGGGCTTGGTCCTTGGTGAAAGCTGGAAAAATAGGGGAAACTCTAGACCCTTCACTGCTGAAAGATGGGGATTCTTCTAATTCAAATCCAAAAGCCATAATGGAAAGATTCATTGCGGTTGGAATTTTATGTTCTCATGTGATGGTTGCTTTGAGGCCCACCATTATGGAAGCTCTGAAAATGTTGGAAGGTGACATTGAAGTTCCCCAAATTTCTGATCGGCCAGTGCCTTATGGACATCCTTCATTTGTTGGTGATGGCAGCAACTTCAGTATATCACCGACATTAAGTGGACGTGAATTGCATAACGGTGACATGCTCAGATGA 1965 43.26 MQNQETMKIFSSFLLCLLSVVTVTSAATPIANPICPMDLNYVLRIPWNATDCRNPFFQATAKSAMNDTSKIPCCQTLLSLFGIALAQHLKETSLFNLPDLATSNSCLRDYQSKLSSLSLPGDLVSNCFNPLQFVISANVCAGIQTTRDWVSKLGPNSPLDSGCRSELVGPGCDACLAAGLKVQATLTRIDGNKSHSMDCFYFAVLYAAGIVNESGPEGDSALGCIFNLPLSTQKDSKSNHSALVYGLTAAAVGILVVFVLLGIGFWFYKWKKLAQKSSLEFDVELDEQGSRPHARPNTGSIWFKIQELEKATNNFSSKNFIGRGGFGLVYKGTLPDGSMVAVKKVIESDFQGNAEFCNEVEIISNLKHRNLVPLRGCCVIDGDDGHDEGASERYLVYDYMPNGNLDDYLFPIPFDEVGTVKKSLTWPQRKNIILDVAKGLAYLHYGVKPAIYHRDIKATNILLDADMRARVADFGLAKQSREGQSHLTTRVAGTHGYLAPEYALYGQLTEKSDVYSFGVVVLEIMCGRKALDFSLSSSPRAFLITDWAWSLVKAGKIGETLDPSLLKDGDSSNSNPKAIMERFIAVGILCSHVMVALRPTIMEALKMLEGDIEVPQISDRPVPYGHPSFVGDGSNFSISPTLSGRELHNGDMLR 654
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 10064083 10066047 - CmPI595203_05g010690.1 Cmu05g1069 415983
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu05g1069 654 Pfam Protein kinase domain 317 532 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cmu05g1069 654 ProSiteProfiles Protein kinase domain profile. 315 584 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cmu05g1069 654 FunFam probable LRR receptor-like serine/threonine-protein kinase RKF3 400 616 - -
Cmu05g1069 654 SMART serkin_6 315 608 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cmu05g1069 654 ProSitePatterns Serine/Threonine protein kinases active-site signature. 451 463 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cmu05g1069 654 ProSitePatterns Protein kinases ATP-binding region signature. 321 344 IPR017441 GO:0005524(InterPro)
Cmu05g1069 654 SUPERFAMILY Protein kinase-like (PK-like) 293 609 IPR011009 -
Cmu05g1069 654 FunFam probable receptor-like protein kinase At1g11050 276 399 - -
Cmu05g1069 654 Gene3D Phosphorylase Kinase; domain 1 280 399 - -
Cmu05g1069 654 Gene3D Transferase(Phosphotransferase) domain 1 400 618 - -
Cmu05g1069 654 PANTHER OS01G0750732 PROTEIN 51 617 IPR050885 -
Cmu05g1069 654 Pfam SPARK 33 200 IPR043891 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu05g1069 Cmu-Chr5:10064083 Cmu09g0632 Cmu-Chr9:5846196 3.50E-98 dispersed
Cmu05g1069 Cmu-Chr5:10064083 Cmu08g1713 Cmu-Chr8:28587755 5.80E-69 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
75534 PF00069 Pkinase 8.00E-43 CL0016 Cmu PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu05g1069 - - - 0.0