Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu05g1093 ATGGAGATTGATCTATCACTCAAAATAGATCATCACAAGGAAGAAATATTCAAACAACAAAAAGATCTTCAACAACAACAACAAATAATTGGAACAGTTGATGTTCTTGCAGCTTCTACCTCTGCTTTCAAACTGTTTTTGCCACACAACATTAATGTAGGAGGAGAGATTTCAGAGTTACAAATGGAAATGGATCGTATGAAGGAAGAGAACAAAGTGTTGAGAAAAGCTGTGGAACAAACAATGAAAGATTATTATGATCTTGAAATGAAAATTGGTATCATTCAACAAAACAATAACCTCAACAATAAGGACTCTCACAACTTCCTATCATTCCATGAAAATGAGAACAAGAGGCATGAAGAACCAACAAAACAAGACCTCGAACTCGGAGAAATGGCGAAGAAGAAGAGACGAGTTCGGTCGCCATCGAAGGAGGACGAAATGAGGGAGAGTGAACTAGGGTTATCATTAGGGCTCCATACTAAGAACAATGATTTGGATCAAGAAGATAATCATAGGGAATTATTACAAGAAGAAAGAAGAGAAAAGAAGAAGGAAGATTCAATAATGTCCAACTTCTACTCAATCCAAAACAAGCCACAAAGACCTGAATTGCAAGCAATGGCACCCCCACAAAACAGAAAAGCTAGGGTTTCTGTGAGAGCAAGATGTGAATCTGCCACGATGAACGATGGTTGCCAATGGAGGAAATATGGTCAAAAAATTGCGAAGGGAAATCCATGCCCTCGAGCCTATTATCGTTGCACGGTTGCACCAGGATGTCCAGTTAGAAAACAGGTTCAAAGATGTTTAGAAGACATGTCAATTCTTATAACAACGTACGAAGGAACACATAATCATCCACTTCCTGTTGGAGCCACAGCCATGGCTTCCACAGCTTCTGCAGCAGCTTCCTTTATGCTCTTAGACTCCACTAATACTACTAATAATCTTTCTTCTCTTCCAAACCCTCAAAACCCTAATTTTCTAAACCCTCAAAACCCTAATATTCTAAACTCCTCTTCCTATTCTCCAACTAATTTCCTCCAAACTCAAAACCCTAATCAACCCTCAACCAATACATTTTACACTCCATTAATCCCCACATCTTCAACCTCAAACTTCCCCCAACCCTCCAATTGGATCAATACCAACCCTACTTCCTTTTACCATACCAACTTTCCCCTTCACGGCCGCTCCTTGAGACCACCCGACGATAATAAGCCACCGTTCACACCTGAGAGTGTGTCTGCTATTGCTTCTGACCCTAAGTTTCGAGTCGCGGTTGCGGCTGCCATTTCTTCGCTCATTAACAAAGAGAATAACAACACAACAACGTCAAATTCTCCTATCGAAGATTCTTCTTCTTTCGGTCCAAGTAAGGATGGGAAAGGCAGCAGTGGCGGCGGTGATAGTGATGGCAGAAACAAGAAATGGGTTGTTGAGTCCCTCTCATCAAATGGTAATTAA 1473 40.8 MEIDLSLKIDHHKEEIFKQQKDLQQQQQIIGTVDVLAASTSAFKLFLPHNINVGGEISELQMEMDRMKEENKVLRKAVEQTMKDYYDLEMKIGIIQQNNNLNNKDSHNFLSFHENENKRHEEPTKQDLELGEMAKKKRRVRSPSKEDEMRESELGLSLGLHTKNNDLDQEDNHRELLQEERREKKKEDSIMSNFYSIQNKPQRPELQAMAPPQNRKARVSVRARCESATMNDGCQWRKYGQKIAKGNPCPRAYYRCTVAPGCPVRKQVQRCLEDMSILITTYEGTHNHPLPVGATAMASTASAAASFMLLDSTNTTNNLSSLPNPQNPNFLNPQNPNILNSSSYSPTNFLQTQNPNQPSTNTFYTPLIPTSSTSNFPQPSNWINTNPTSFYHTNFPLHGRSLRPPDDNKPPFTPESVSAIASDPKFRVAVAAAISSLINKENNNTTTSNSPIEDSSSFGPSKDGKGSSGGGDSDGRNKKWVVESLSSNGN 490
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 10343610 10348506 + CmPI595203_05g010930.1 Cmu05g1093 416007
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu05g1093 490 Pfam WRKY DNA -binding domain 231 289 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cmu05g1093 490 PANTHER WRKY TRANSCRIPTION FACTOR 36-RELATED 22 445 IPR044810 GO:0003700(InterPro)
Cmu05g1093 490 MobiDBLite consensus disorder prediction 196 217 - -
Cmu05g1093 490 MobiDBLite consensus disorder prediction 131 154 - -
Cmu05g1093 490 MobiDBLite consensus disorder prediction 131 171 - -
Cmu05g1093 490 MobiDBLite consensus disorder prediction 395 418 - -
Cmu05g1093 490 SUPERFAMILY WRKY DNA-binding domain 223 291 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cmu05g1093 490 ProSiteProfiles WRKY domain profile. 225 291 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cmu05g1093 490 MobiDBLite consensus disorder prediction 441 490 - -
Cmu05g1093 490 MobiDBLite consensus disorder prediction 441 463 - -
Cmu05g1093 490 SMART WRKY_cls 230 290 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cmu05g1093 490 Coils Coil 160 187 - -
Cmu05g1093 490 Gene3D WRKY domain 215 292 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cmu05g1093 490 Coils Coil 50 84 - -
Cmu05g1093 490 FunFam probable WRKY transcription factor 31 215 292 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu01g1412 Cmu-Chr1:27627132 Cmu05g1093 Cmu-Chr5:10343610 1.70E-43 dispersed
Cmu02g0205 Cmu-Chr2:2001391 Cmu05g1093 Cmu-Chr5:10343610 2.50E-41 dispersed
Cmu05g1093 Cmu-Chr5:10343610 Cmu06g1686 Cmu-Chr6:27912671 9.10E-43 dispersed
Cmu10g2785 Cmu-Chr10:34450698 Cmu05g1093 Cmu-Chr5:10343610 2.30E-14 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
6170 PF03106 WRKY 2.00E-24 CL0274 Cmu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu05g1093 - - - 0.0