Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu05g1098 ATGTCATTCCGAAGCATTGTTCGCGATGTGAGGGATAGTATTGGGAGCTTATCTAGACGGGGTTTTGAGGTCAAGTTGAGTGGTCATCATAGAGGAAAGTCCAATGCATCGTCGCTGAATGATCTACATGACCAGCCTCCTGTTGTTCAGAATGGCTGCTGGGCTAGTCTTCCACCCGAGCTGTTGTATGATGTCATTCGAAGACTTGAAGAGAGTGAAAACACATGGCCTTCACGAAAGAATGTCGTTGCCTGTGCTGCAGTATGTCGTTCTTGGAGAATTATGTGCATGGAGATAGTTAAAGGCCCAGAAATTTGTGGGAAGCTTACCTTCCCAGTGTCACTGAAGCAGCCAGGACCACGCGATGGATCTGTACAGTGCTTCATTAAGAGGGATAAATCCAACCTAACATACCACCTCTACTTGTGTCTTAGCCCTGCTCTGCTGGTTGAAAATGGGAAATTTCTTCTCTCTGCAAAGCGTACACGAAGAACTACCAGCACAGAGTATATTATCTCGATGGACGCAGAAAACATTTCGAGATCAAGTAGCTCTTACATCGGAAAACTGAGGTCGAACTTTCTTGGAACAAAATTCATCGTCTATGATACTCAACCTCCATACACCGCTGCCCCGCTCCCTCCTCCGGGGAAAACTAGCCGTAGATTTTATTCAAAAAAGGTCTCACCAAAAGTCCCAACTGGCAGTTATAACATAGCCCATATAAGTTATGAACTAAACGTCTTAGGCACACGGGGACCCCGGAGAATGCACTGTATAATGCATTCAATACCAGTGTCTTCTCTTGATGCTGGTGGCACTGTTCCAGGACAACCCGAACTCCTCCCTCCCAACTCCCTCGACGACTCATTTCGGAGTGCATCCTTCTCCAAAGCCCTAGATCATTCCATGGAGTTCAGTAGTGCTAGATTTTCAGAAATTGGGAGGGCAGCATTGGATGGCGACGAGGAGGGAAAGATGAGACCTTTGGTTCTCAAAAACAAGCCCCCAAGATGGCACGAACAACTGCAATGTTGGTGCCTCAACTTTCGTGGGCGGGTAACCGTTGCATCGGTTAAGAACTTTCAGTTAATTGCAGCAATACAGCCAGCTGCTGGCGCTCCAACCCCGTCTCAACCAGGCCCACCCGAGCACGACAAGATCATTCTTCAGTTCGGGAAGGTCGGTAAAGACATGTTCACGATGGATTATCGTTATCCGCTCTCTGCTTTTCAGGCTTTTGCTATATGCTTGAGCAGCTTTGATACCAAATTGGCTTGTGAATAA 1287 47.16 MSFRSIVRDVRDSIGSLSRRGFEVKLSGHHRGKSNASSLNDLHDQPPVVQNGCWASLPPELLYDVIRRLEESENTWPSRKNVVACAAVCRSWRIMCMEIVKGPEICGKLTFPVSLKQPGPRDGSVQCFIKRDKSNLTYHLYLCLSPALLVENGKFLLSAKRTRRTTSTEYIISMDAENISRSSSSYIGKLRSNFLGTKFIVYDTQPPYTAAPLPPPGKTSRRFYSKKVSPKVPTGSYNIAHISYELNVLGTRGPRRMHCIMHSIPVSSLDAGGTVPGQPELLPPNSLDDSFRSASFSKALDHSMEFSSARFSEIGRAALDGDEEGKMRPLVLKNKPPRWHEQLQCWCLNFRGRVTVASVKNFQLIAAIQPAAGAPTPSQPGPPEHDKIILQFGKVGKDMFTMDYRYPLSAFQAFAICLSSFDTKLACE 428
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 10393178 10395437 + CmPI595203_05g010980.1 Cmu05g1098 416012
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu05g1098 428 ProSitePatterns Tub family signature 1. 350 363 IPR018066 -
Cmu05g1098 428 SUPERFAMILY F-box domain 45 97 IPR036047 GO:0005515(InterPro)
Cmu05g1098 428 PANTHER TUBBY-RELATED 44 427 - -
Cmu05g1098 428 Pfam F-box-like 54 97 IPR001810 GO:0005515(InterPro)
Cmu05g1098 428 PRINTS Tubby superfamily signature 170 186 IPR000007 -
Cmu05g1098 428 PRINTS Tubby superfamily signature 236 263 IPR000007 -
Cmu05g1098 428 PRINTS Tubby superfamily signature 406 428 IPR000007 -
Cmu05g1098 428 PRINTS Tubby superfamily signature 350 366 IPR000007 -
Cmu05g1098 428 PRINTS Tubby superfamily signature 332 349 IPR000007 -
Cmu05g1098 428 PRINTS Tubby superfamily signature 385 404 IPR000007 -
Cmu05g1098 428 PRINTS Tubby superfamily signature 186 210 IPR000007 -
Cmu05g1098 428 CDD F-box_AtTLP-like 54 98 - -
Cmu05g1098 428 Pfam Tub family 115 423 IPR000007 -
Cmu05g1098 428 SUPERFAMILY Tubby C-terminal domain-like 103 428 IPR025659 -
Cmu05g1098 428 Gene3D - 49 101 - -
Cmu05g1098 428 FunFam Tubby-like F-box protein 111 428 - -
Cmu05g1098 428 Gene3D Tubby Protein; Chain A 113 422 IPR025659 -
Cmu05g1098 428 ProSitePatterns Tub family signature 2. 413 428 IPR018066 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu01g1898 Cmu-Chr1:32454499 Cmu05g1098 Cmu-Chr5:10393178 9.50E-118 dispersed
Cmu05g0635 Cmu-Chr5:5459149 Cmu05g1098 Cmu-Chr5:10393178 1.60E-119 dispersed
Cmu05g1098 Cmu-Chr5:10393178 Cmu08g0328 Cmu-Chr8:8854832 2.30E-191 dispersed
Cmu05g1098 Cmu-Chr5:10393178 Cmu05g1935 Cmu-Chr5:29236522 8.90E-119 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
6171 PF01167 Tub 8.00E-117 CL0395 Cmu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu05g1098 K19600 - csv:101216314 867.84