Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu05g1115 ATGGCCGCCACCGCATTGAGCAGAGCTTTGTTTCTAATGGGGTTTCTTCTCTTTCTTCAACTGCAGCTTCCCGAAACAATGGCGGATTGTCCCTTGGACTTGAGTGGATCAAACTTTACTTTAGTTGCTTCTATTTGCTCTAACCCCAATGAAAGAGGGAAGTGCTGCCGCTATATCAATGCATTTGTTGCAGTTTCTGTTGCTCAGCTTGCAAATGCAACCGGTGTATTGGGAGTTTCTTCAGACTTGTCTAACATTTGCCTGCAATCTATATTTCAAACCATGGGATTGTATGGAGTTCCTAGAAATGCCACGGTTTTCTGTGGGGTTGGAACAAAAATTCCAGTGAACTACGCATGTAGAGGCCGCGAAACTGTCACACAGATGCTGGAATCTCCGAAATTTACAAACGTCAGTGAAAATTGCAAGTTGCCACTATCGGAGGAGAGTACTTGTAGGAAGTGTATTAATGCTGGGATTTTATATCTCCGCAATCTGATTGGAAGAGAAGATAATATAACGTTGAATACTTGTCGCGACGCTACATTTGTTGCACTTGCTAGCCAACTTGATCCTGCTTCAGTTGTTGATCTTGCAACCTGCTTCTTTGGAGTTCAAGGCCTTAACAAGCCTCCAGCTCCACCCCCATCTTTCGCTACACCTGATATTTCCCCAAGTCCATCAGCTGCTGAGAGTCCGGGGCCACTGACGCTAGGTGTTTCTGGTGATAAAAGTCATGAACATCATTCCTACCATCTAACATTAGTGGCGGGTATTGGCATTGCGGTGACTGTCGCTTCTGTAATGATGCTGGTTGTCTTGATTGTGCTGATTCGAAGGAAAAGCAGAGAGCTAAAGGATTCTGATAAGACGGATGTTAACTCTTCAAAATCCTTCCCTTCTCGTCCCATCAAAAAGTATCAGGAAGGACCTTCAATGTTTAAAAAGTTCAGCTATAAGGAGATCAAGAAGGCAACAGATAGTTTTAGTACAACAATTGGTCAAGGAGGATATGGAACTGTTTATAAAGCTCAATTCAGTGATGACTTAGTGGTAGCTGTTAAGAGGATGAACAAATTCTCCGAGCAAGGGGATGATGAATTTGGCAGAGAAATAGAGCTGCTTGCGAGATTACATCACCGACATCTTGTTGCTTTAAGGGGCTTTTGTGTTGAAAAGCATGAACGGTTTCTTGTATACGAGTATATGGCTAATGGAAGCTTGAAGGATCATCTTCATGCTCCTGGCAGGACCCCTCTAAGTTGGCGGACAAGAATCCAAATTGCCATTGATGTCGCCAATGCTCTGGAGTATCTTCACTATTATTGTGATCCCCCACTGTGCCATAGAGACATTAAGTCCAGCAACATTTTACTGGATGAGAACTTTGTTGCTAAGGTTGCTGATTTTGGCCTTGCACACGCTTCAAAGGGTGGTTCTATTTTCTTTGAACCTGTAAATACCGATATCCGGGGAACGCCAGGTTATATGGATCCCGAGTATGTTATCACACAAGAACTTACTGAGAAAAGTGATATATACAGCTATGGCGTGCTACTTCTGGAAATAGTTACTGGCAGACGTGCGATACAAGACGGGAAGAATTTGGTTGAATGGTCCCTGGGGTACATGATTTCAGATTCAAGGATATCCGAACTAGTAGATCCAAGTCTCAAGAGTTCTTTTAACTTGGACCAACTTCACACGGTTCTGTCAATTGTGAGATGGTGCACCGAGGGAGAAGGCAGGGCAAGGCCTTCAATTAAACAGGTGCTTCGACTATTGTACGAGAGCTCGGACCCAATGCATCAAGGGCTCGTAGAGGCTGTGGATGATGAAGAATATGGAGGTATTGAAGGGAGACAGAGCATGAGCAAGAGAAAAATGCATAAAAGTGATGCAATTTTCCACAGTGGAGATGGAAGGTATCTTGCTTCTTCATCAAGCACATCTAGGTCATATTGTAGTAGAAGCTTTTTGCTTGAAACTGGTTCACCACAGTCTCCTCCCAATAATTTGTCTGTTTCAGACCAATTGTTTTAG 2043 43.47 MAATALSRALFLMGFLLFLQLQLPETMADCPLDLSGSNFTLVASICSNPNERGKCCRYINAFVAVSVAQLANATGVLGVSSDLSNICLQSIFQTMGLYGVPRNATVFCGVGTKIPVNYACRGRETVTQMLESPKFTNVSENCKLPLSEESTCRKCINAGILYLRNLIGREDNITLNTCRDATFVALASQLDPASVVDLATCFFGVQGLNKPPAPPPSFATPDISPSPSAAESPGPLTLGVSGDKSHEHHSYHLTLVAGIGIAVTVASVMMLVVLIVLIRRKSRELKDSDKTDVNSSKSFPSRPIKKYQEGPSMFKKFSYKEIKKATDSFSTTIGQGGYGTVYKAQFSDDLVVAVKRMNKFSEQGDDEFGREIELLARLHHRHLVALRGFCVEKHERFLVYEYMANGSLKDHLHAPGRTPLSWRTRIQIAIDVANALEYLHYYCDPPLCHRDIKSSNILLDENFVAKVADFGLAHASKGGSIFFEPVNTDIRGTPGYMDPEYVITQELTEKSDIYSYGVLLLEIVTGRRAIQDGKNLVEWSLGYMISDSRISELVDPSLKSSFNLDQLHTVLSIVRWCTEGEGRARPSIKQVLRLLYESSDPMHQGLVEAVDDEEYGGIEGRQSMSKRKMHKSDAIFHSGDGRYLASSSSTSRSYCSRSFLLETGSPQSPPNNLSVSDQLF 680
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 10569044 10575922 - CmPI595203_05g011150.1 Cmu05g1115 416029
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu05g1115 680 SUPERFAMILY Protein kinase-like (PK-like) 308 596 IPR011009 -
Cmu05g1115 680 ProSitePatterns Serine/Threonine protein kinases active-site signature. 447 459 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cmu05g1115 680 FunFam Putative receptor-like protein kinase 296 402 - -
Cmu05g1115 680 Pfam SPARK 28 168 IPR043891 -
Cmu05g1115 680 Gene3D Phosphorylase Kinase; domain 1 290 402 - -
Cmu05g1115 680 ProSitePatterns Protein kinases ATP-binding region signature. 333 355 IPR017441 GO:0005524(InterPro)
Cmu05g1115 680 Gene3D Transferase(Phosphotransferase) domain 1 403 614 - -
Cmu05g1115 680 ProSiteProfiles Protein kinase domain profile. 327 606 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cmu05g1115 680 SMART serkin_6 327 602 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cmu05g1115 680 MobiDBLite consensus disorder prediction 661 680 - -
Cmu05g1115 680 FunFam Putative receptor-like protein kinase 403 603 - -
Cmu05g1115 680 CDD STKc_IRAK 333 595 - -
Cmu05g1115 680 Pfam Protein kinase domain 330 593 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cmu05g1115 680 PANTHER OS01G0750732 PROTEIN 171 638 IPR050885 -
Cmu05g1115 680 MobiDBLite consensus disorder prediction 213 243 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu02g1109 Cmu-Chr2:22540735 Cmu05g1115 Cmu-Chr5:10569044 3.70E-24 dispersed
Cmu05g1115 Cmu-Chr5:10569044 Cmu05g1542 Cmu-Chr5:24239520 1.30E-66 dispersed
Cmu01g0115 Cmu-Chr1:987957 Cmu05g1115 Cmu-Chr5:10569044 1.00E-46 transposed
Cmu02g2233 Cmu-Chr2:35924664 Cmu05g1115 Cmu-Chr5:10569044 1.10E-52 transposed
Cmu10g2779 Cmu-Chr10:34395656 Cmu05g1115 Cmu-Chr5:10569044 7.10E-63 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
75535 PF00069 Pkinase 3.40E-49 CL0016 Cmu PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu05g1115 - - - 0.0