Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu05g1123 ATGTTACTCAACAAAATTGAACAAAAATTGCCAACACCGACCCTTAATGCGGCTGGACAGCGACTCCAAATCTTCAACCCAGATGCCAAGACTCAATGGGCAACGTTAACACGGGTTGCGGCGTCTTGGTGGAGCGACGTGCAGACGACAACCACTGGTAAAGGTGAGGCTGCCGACATAGACCGTCACTGCCAACCGAAAAAAGTTACCGTTACCGGTTACCTACGGATTCCCGACTTGACCTCGTCAGATGGGCCCACAGTGCATTGCGATGGACGGTTGAGATTTCGTAGTGCAGTTTCATCTGCCCTCCAAACCCTCGCGTTTTTTTGTTCCCGTCTCTTCCTCCGTCGCTCTCTACGTCACGCGCCGCCCCGTTTTCCGGCGGCTGATCATTTCTCCACTCGGATCTTTCCGATTATCTATCCGGTGCAAGCTCAGCCTCAGAATGCTATTTCCGGCATCAATCCAGCGGCGAATGGTGGTGCCAATTTTGTGACTACTTCTTTGTACGTCGGAGATCTGGACCTGAATGTCACGGATTCGCAGCTTTATGACATATTTAATCAGGTGGGTCAGGTGGTTTCGGTTCGGGTTTGCCGAGACTTGACGACCCGGCGATCTCTCGGTTATGGTTATGTCAACTACAGCAACCCACAAGATGCTGCAAGAGCATTGGATGTGCTGAACTTTACCCCTTTGAATGGAAAGCCTATTAGAGTTATGTATTCTCATCGTGACCCAAGCATTCGCAAAAGTGGGGCTGGAAATATATTTATTAAGAATTTAGACAAGGCAATTGACCACAAAGCTCTACATGATACATTTTCTGCATTTGGTAGTATCCTGTCTTGCAAAGTGGCGTTAGATTCCTCTGGCCAGTCAAAAGGCTATGGTTTTGTGCAATTTGACAATGAGGACTCTGCTCAGAAAGCAATTGAGAAGCTGAACGGTATGCTGTTGAATGATAAGCAAGTTTATGTAGGACCCTTTCTTCGTAAACAAGAAAGAGATGGTGTTGTTGACAAATCCAAATTTAACAATGTATTTGTAAAAAATCTTTCTGAGACAACTACTGAAGAGGATTTGAACAAGGCTTTTTCTGAATTTGGGACACTCACCAGTATTGTTGTGATGAGGGATGCTGATGGCAAATCAAGATGCTTTGGATTTGTTAATTTTGAAAATGCTGATGATGCTGCTAGGGCAGTTGATGCGCTCAACGGAAAGTTAGTTGATGATAAGGAGTGGTATGTTGGGAAAGCACAGAAAAAATCTGAAAGAGAAGTTGAATTAAAGCACCGGTTTGAACAAACTATGAAAGAGGCAGCGGACAAGTACCAGGGGGCAAATTTGTACATTAAAAATTTAGATGATAGCATTGGTGATGATAAGCTTAAGGAGCTGTTTGCTCCATTTGGCACAATCACCTCATGCAAGGTCATGCGCGACCCCAATGGTATAAGCAGAGGTTCTGGATTTGTTGCATTCTCAACCCCTGAAGAGGCATCTAGAGCTCTTATGGAGATGAATGGCAAAATGGTTGTTAGCAAACCATTGTATGTAGCACTTGCACAGCGGAAGGAAGATAGAAGAGCCAGATTGCAGGCTCAGTTCTCTCAAATCCGGCCAGTTGCCATGGCTGCTTCAGTTGCCCCTCGGATGCCAATATACCCTCCTGGTGGTCCAGGTATTGGACAGCAGTTGTTTTACGGTCAAGGTCCTCCTGCAATGATTCCTTCCCAAGGTGGCTTTGGTTATCAGCAGCAGCTTGTTCCTGGTATAAGGCCTGGTGGAGGACCAATGCCAAATTTCTTTGTTCCAATGGTTCAGCAGGGTCAGCAAGGTCAGCGCCCTGGTGGCAGACGTGCAGGAGCTGTCCAGCAAACTCAGCAGCCTGTTCCAATGATGCAACAACAGATGTTGCCTAGAGGAGGACGTGTCTATCGCTACCCCCCTGGAAGAGGTTTGCCTGATGTTCCTATGCCTGGTGTTGCTGGAGGCATGTTTTCTGTTCCATATGATATGGGAGGTATGCCATTGCGTGATGCGGCACACTCTCAACCTATCCCTATTGGTGCTCTGGCTTCTGCTCTTGCAAATGCTACTCCAGACCAACAGAGAACAATGCTGGGGGAGAATCTTTACCCGCTAGTGGAACAGTTGGAGCCGGACAATGCGGCCAAGGTAACTGGAATGCTTCTGGAGATGGACCAGACTGAGGTTTTGCATTTACTAGAGTCCCCAGAGGCTTTGAAGGCCAAAGTAGCCGAAGCTATGGAGGTTTTGAGGAATGTTGCTGCAGCTCAGCAGCAGCAAGCTGGCAATGCAGCGGATCAGCTAGCTTCTCTGTCGCTGACCGAGAACCTCGTGTCATGA 2379 47.46 MLLNKIEQKLPTPTLNAAGQRLQIFNPDAKTQWATLTRVAASWWSDVQTTTTGKGEAADIDRHCQPKKVTVTGYLRIPDLTSSDGPTVHCDGRLRFRSAVSSALQTLAFFCSRLFLRRSLRHAPPRFPAADHFSTRIFPIIYPVQAQPQNAISGINPAANGGANFVTTSLYVGDLDLNVTDSQLYDIFNQVGQVVSVRVCRDLTTRRSLGYGYVNYSNPQDAARALDVLNFTPLNGKPIRVMYSHRDPSIRKSGAGNIFIKNLDKAIDHKALHDTFSAFGSILSCKVALDSSGQSKGYGFVQFDNEDSAQKAIEKLNGMLLNDKQVYVGPFLRKQERDGVVDKSKFNNVFVKNLSETTTEEDLNKAFSEFGTLTSIVVMRDADGKSRCFGFVNFENADDAARAVDALNGKLVDDKEWYVGKAQKKSEREVELKHRFEQTMKEAADKYQGANLYIKNLDDSIGDDKLKELFAPFGTITSCKVMRDPNGISRGSGFVAFSTPEEASRALMEMNGKMVVSKPLYVALAQRKEDRRARLQAQFSQIRPVAMAASVAPRMPIYPPGGPGIGQQLFYGQGPPAMIPSQGGFGYQQQLVPGIRPGGGPMPNFFVPMVQQGQQGQRPGGRRAGAVQQTQQPVPMMQQQMLPRGGRVYRYPPGRGLPDVPMPGVAGGMFSVPYDMGGMPLRDAAHSQPIPIGALASALANATPDQQRTMLGENLYPLVEQLEPDNAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRNVAAAQQQQAGNAADQLASLSLTENLVS 792
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 10663532 10670514 - CmPI595203_05g011230.1 Cmu05g1123 416037
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu05g1123 792 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 450 527 IPR000504 GO:0003723(InterPro)
Cmu05g1123 792 SMART poly_2 703 766 IPR002004 GO:0003723(InterPro)
Cmu05g1123 792 FunFam Polyadenylate-binding protein 433 538 - -
Cmu05g1123 792 FunFam Polyadenylate-binding protein 337 432 - -
Cmu05g1123 792 Gene3D - 433 535 IPR012677 -
Cmu05g1123 792 FunFam Polyadenylate-binding protein 154 256 - -
Cmu05g1123 792 SMART rrm2_1 257 329 IPR003954 GO:0003676(InterPro)
Cmu05g1123 792 SMART rrm2_1 348 420 IPR003954 GO:0003676(InterPro)
Cmu05g1123 792 SMART rrm2_1 451 523 IPR003954 GO:0003676(InterPro)
Cmu05g1123 792 SMART rrm2_1 169 242 IPR003954 GO:0003676(InterPro)
Cmu05g1123 792 MobiDBLite consensus disorder prediction 612 633 - -
Cmu05g1123 792 CDD RRM2_I_PABPs 254 330 IPR045305 -
Cmu05g1123 792 Pfam Poly-adenylate binding protein, unique domain 698 763 IPR002004 GO:0003723(InterPro)
Cmu05g1123 792 ProSiteProfiles Poly(A)-binding protein C-terminal (PABC) domain profile. 691 768 IPR002004 GO:0003723(InterPro)
Cmu05g1123 792 SUPERFAMILY PABC (PABP) domain 634 784 IPR036053 GO:0003723(InterPro)
Cmu05g1123 792 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 256 328 IPR000504 GO:0003723(InterPro)
Cmu05g1123 792 CDD RRM1_I_PABPs 169 248 IPR034364 -
Cmu05g1123 792 Gene3D - 158 256 IPR012677 -
Cmu05g1123 792 SUPERFAMILY RNA-binding domain, RBD 168 337 IPR035979 GO:0003676(InterPro)
Cmu05g1123 792 Gene3D - 257 329 IPR012677 -
Cmu05g1123 792 FunFam Polyadenylate-binding protein 687 770 - -
Cmu05g1123 792 Gene3D - 687 768 - -
Cmu05g1123 792 SMART rrm1_1 451 523 IPR000504 GO:0003723(InterPro)
Cmu05g1123 792 SMART rrm1_1 257 329 IPR000504 GO:0003723(InterPro)
Cmu05g1123 792 SMART rrm1_1 169 242 IPR000504 GO:0003723(InterPro)
Cmu05g1123 792 SMART rrm1_1 348 420 IPR000504 GO:0003723(InterPro)
Cmu05g1123 792 Pfam RNA recognition motif 452 520 IPR000504 GO:0003723(InterPro)
Cmu05g1123 792 Pfam RNA recognition motif 170 240 IPR000504 GO:0003723(InterPro)
Cmu05g1123 792 Pfam RNA recognition motif 258 326 IPR000504 GO:0003723(InterPro)
Cmu05g1123 792 Pfam RNA recognition motif 349 417 IPR000504 GO:0003723(InterPro)
Cmu05g1123 792 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 168 246 IPR000504 GO:0003723(InterPro)
Cmu05g1123 792 CDD RRM4_I_PABPs 449 527 - -
Cmu05g1123 792 Gene3D - 332 432 IPR012677 -
Cmu05g1123 792 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 347 424 IPR000504 GO:0003723(InterPro)
Cmu05g1123 792 PANTHER RNA BINDING PROTEIN 163 349 - GO:0003723(PANTHER)|GO:0003730(PANTHER)|GO:0005634(PANTHER)|GO:0005829(PANTHER)|GO:0008143(PANTHER)|GO:0008266(PANTHER)|GO:1990904(PANTHER)
Cmu05g1123 792 FunFam Polyadenylate-binding protein 257 330 - -
Cmu05g1123 792 NCBIfam polyadenylate binding protein, human types 1, 2, 3, 4 family 169 764 IPR006515 GO:0003723(InterPro)
Cmu05g1123 792 SUPERFAMILY RNA-binding domain, RBD 347 531 IPR035979 GO:0003676(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu05g0795 Cmu-Chr5:7062167 Cmu05g1123 Cmu-Chr5:10663532 4.40E-29 dispersed
Cmu05g1123 Cmu-Chr5:10663532 Cmu08g0665 Cmu-Chr8:18907602 1.20E-188 dispersed
Cmu08g1043 Cmu-Chr8:22760906 Cmu05g1123 Cmu-Chr5:10663532 3.10E-08 transposed
Cmu09g1521 Cmu-Chr9:28334888 Cmu05g1123 Cmu-Chr5:10663532 3.90E-08 transposed
Cmu02g0641 Cmu-Chr2:6338645 Cmu05g1123 Cmu-Chr5:10663532 0.00E+00 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu05g1123 K13126 - csv:101219802 1198.34