Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu05g1129 ATGGCAATGCATCGGTACGTACAAGCTGATGATGATGCCCAAACCCATTTGTTTCCGCTCGATTCTTTGTTTTGTGAAGAGGAGAAATGGGAGGAGGAGGAGGAGCAGGAGGAAGATGTAGCTGAGTTAGAACAAACCCATTTCTCTTCTTTGGGATTTTTGGACGAACATCTCTCCGGGGAAGATGAACGGCTTCTCTCCATGTTGTCTAAGGAAACAGAGCAGCTGAAACAGAGCAATCTCCACCTTGAAGCTTTGTTGATGGATCCTTCTATTTCTGCTGCTCGTTCTTCAGCTGTGGACTGGATGCTCAAAGTTCAATCCCATTATGGGTTTTCAACTCTCACTGCCATTTTGGCTGTTGCTTATTTTGACAGATTCCTCCTGAGCTTCCATTTTAAGAGTGACAAGCCGTGGATGAACCAGCTTGTGGCTGTCACTTGCCTCTCTTTGGCGGCTAAAGTGGAGGAGATTCAAGTTCCTCTTCTCTTGGACCTTCAAGTAGAGGATGCTAAGTATGTGTTTGAGGCCAAAACCATTCAGAGAATGGAGCTTCTAGTGCTCTCAACTCTTCAATGGAGGATGCATTTGGTGACTCCATATTCTTTTCTTGATCACATTGTAAAGAGGCTTGGGTTAAAGAACAATCTTCACTTGGAGTTTTTCAGGCGTTCTGAGTATCTTCTCCTCTCTCTACTTTCAGATTCAAGATTTGTGGGTTATCTCCCATCTGTCTTGGCAACTGCAACAATGATGGAAGTGATAGATCAGATTGAGCCTCATAAGACATTGGAGCACCAAGATAAGCTTCTGGGTGTCCTCAAAATGAACAAGGAAAAGGTGCAATGCTGTTACAATCTTGTTGTGGAGCATTCAAAGGCCTATTCCAGTGGCTTTTATCATCCCATCAACTCCCACAAGCGCAAGCATGAACAGCAAGCTCCTGATAGCCCAAGTGGTGTGATTGATGCTGGTTTCAGTTCAGACAGCTCCAATGATTCTTGGGCATTTAGAGCAACATCAGTTTGTTCATCACCTGAACCTTCTTTCAAGAAGAGCAAATCTGAAGAGTCAAAGATGGAATTTCATTCTCTTAACAGGGCCTTTCTGGACATTGTTGGCAGCCCTTCTTGA 1134 44.18 MAMHRYVQADDDAQTHLFPLDSLFCEEEKWEEEEEQEEDVAELEQTHFSSLGFLDEHLSGEDERLLSMLSKETEQLKQSNLHLEALLMDPSISAARSSAVDWMLKVQSHYGFSTLTAILAVAYFDRFLLSFHFKSDKPWMNQLVAVTCLSLAAKVEEIQVPLLLDLQVEDAKYVFEAKTIQRMELLVLSTLQWRMHLVTPYSFLDHIVKRLGLKNNLHLEFFRRSEYLLLSLLSDSRFVGYLPSVLATATMMEVIDQIEPHKTLEHQDKLLGVLKMNKEKVQCCYNLVVEHSKAYSSGFYHPINSHKRKHEQQAPDSPSGVIDAGFSSDSSNDSWAFRATSVCSSPEPSFKKSKSEESKMEFHSLNRAFLDIVGSPS 377
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 10739815 10741246 + CmPI595203_05g011290.1 Cmu05g1129 416043
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu05g1129 377 SMART cyclin_7 202 290 IPR013763 -
Cmu05g1129 377 SMART cyclin_7 101 189 IPR013763 -
Cmu05g1129 377 SMART Cyclin_C_2 198 333 IPR004367 -
Cmu05g1129 377 CDD CYCLIN_AtCycD-like_rpt2 198 288 - -
Cmu05g1129 377 Gene3D - 78 196 - -
Cmu05g1129 377 Pfam Cyclin, C-terminal domain 198 311 IPR004367 -
Cmu05g1129 377 CDD CYCLIN_AtCycD-like_rpt1 95 193 - -
Cmu05g1129 377 FunFam CYCLIN D32 197 286 - -
Cmu05g1129 377 PANTHER CYCLINS 47 290 IPR039361 GO:0000079(PANTHER)|GO:0000307(PANTHER)|GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0016538(PANTHER)|GO:0044772(PANTHER)
Cmu05g1129 377 SUPERFAMILY Cyclin-like 62 196 IPR036915 -
Cmu05g1129 377 Gene3D - 67 286 - -
Cmu05g1129 377 ProSitePatterns Cyclins signature. 96 127 IPR048258 -
Cmu05g1129 377 FunFam D3-type cyclin 89 196 - -
Cmu05g1129 377 Pfam Cyclin, N-terminal domain 69 195 IPR006671 -
Cmu05g1129 377 MobiDBLite consensus disorder prediction 306 332 - -
Cmu05g1129 377 SUPERFAMILY Cyclin-like 199 260 IPR036915 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu05g1129 Cmu-Chr5:10739815 Cmu08g1552 Cmu-Chr8:27353605 8.20E-76 dispersed
Cmu01g1701 Cmu-Chr1:30745163 Cmu05g1129 Cmu-Chr5:10739815 6.30E-27 transposed
Cmu01g1656 Cmu-Chr1:30302140 Cmu05g1129 Cmu-Chr5:10739815 1.10E-71 wgd
Cmu02g0662 Cmu-Chr2:6588004 Cmu05g1129 Cmu-Chr5:10739815 1.30E-68 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu05g1129 K14505 - csv:101221213 633.254