Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu05g1133 ATGATGCACACCATGAAACCATCGCAACTTCTGGCTCTGTTTTCCACCTTCACTTTCTGTTTCCCCTGTCTTGCTCTCAACAGCGATGGCATTCTCTTGATTTCTCTCAAACACTCCATTCTCGGCGATCCTTTGTCTGTTTTCGCTAATTGGAATTTCTACGACGACACTCCCTGTTCCTGGCGTGGAGTTACCTGCACCGACCTCCGAGACTATGGCGGCGGATGGTCGGATTTCCTCAGAGTTACTGCCCTCTCCCTCCCTGGCAGCCAGCTTCTGGGTTCCATTCCTGATGAGCTTGGAAGGATCGAACACCTTCGTCTTCTCGATCTTTCCGGTAATTTCTTTAATGGGTCTCTTCCCACTTCCATTTTCAATGCTTCTGAGCTTCAGATTCTTTCTCTTTCCAACAATGTTATCTCCGGCGAGTTGCCGGCGGACATTGGGGGTTTGAAGAGTCTTCAGGTTTTGAATCTCTCTGATAATGCGTTGGCCGGAAAAGTCCCGGGAAATCTCACTGCTCTGAAGAATCTAACTGTTGTTTCTCTGAGGAGTAATTACTTCACCGGAGAGATTCCGGGGAATTTCAGTTCGGTTGAGGTTTTGGATCTGTCTTCCAATTTGTTCAATGGATCTTTGCCGGCTGATTTTGGTGGGGAGAAGCTGCGGTATTTGAACTTCTCTTACAATAAAATTTCAAGTCCGATTCCGCTGGATTTCGCCAAGAGGATTCCAATGAATGCGACTATGGATCTTTCTTTCAATAATCTCACCGGAGCAATTCCTCAGTCGATTGCTCTGCTCAGCCAGAAAACAGAGGCATTCGCCGGAAATGAAGATCTCTGTGGGAAGCCATTGAAGCACCTCTGTTCAATTCCTTCTTCACTCACAACCCCCCCAAATGTTTCTGAAAGTTCATCTTCGTCTCCAGCAATCGCCGCCATACCCAAAACAATCGGCTCTGTTCCGGCAACACAGTCCCCCCGAGGTCCAAACGGGACACAAACTTCTCAGCCTCAAAACGCCATGAAACCCATCACAATAGCTGCAATAGCAGTCGGAGACATCGCCGGAATCGCCATTCTCGCCGTTGTGATTCTCTACGTCTACCACCACCGGAAACGTAAAAACCCCAACTCCAAAACCCCTAAATCCACCGAGAAGAAGCCGCCGATTGACTCAGAACAAGACCCTCAAACTAACCACAAAAAATCCTCATCAGTGTTATTCTGTTTAGCCAACAAAGGAGAAGAGACATCGGAGGCGACGAGTTCTTCCGACGGCGAAGAACAGAGAGAGAAACCCGGAACAACCCACGGCGGAGAGAATAGAGACAGTAAGAAAAACGGCGTGCTGGTGACGGTGGACGGAGAAACAGAGCTGGAATTAGAGACTTTATTAAAGGCATCGGCGTATATACTTGGAGCGAGCGGGGGGAGCATCGTGTACAAGGCGGTGCTGGAGGACGGTACCGCGTTCGCCGTCAGAAGGATCGGCGACGTCAGCGTGGAGAAATTGAGGGATTTTGAGAGCCAAGTGAGAGCCATTGCTAAGGTTCGACATCAAAATTTGGTGAAAATTCGAGGGTTCTTTTGGGGAGAAGATGAGAAGCTCATCATCTATGATTATGTCTCCAATGGCTGCCTTTCAACTTCCCTTCACAGAAAACCGAGTTCATCGTCTTCTTCCCAGAGCCATCTATCATTTGAAGTCCGAGTGAAAATCGCGAGAGGAATCGCCCGAGGACTGGCCTTCATCCACGACAAGAAGCACATCCATGGCAACCTCAAGCCTTCCAACATTCTCTTGAATTCCGAAATGGAGCCCTTAATCGCCGATCTCGGCCTGGACAAGCTCCTCTCCGGCAGATCCAAAATCGCAATCGCCTCCAGTTCTGCCCGAAACTTCGGCAGCCACAGATCCACGCCCAATCGTGAGTACCAAGACGCCAACGGCGGAAGCCCGTCGGTAAGCCTGGGATCGGCGTACCAGGCGCCGGAATCGCTTAAGAATGTGAAAGCGAGCCCTAAATGGGATGTGTATTCGTTCGGGGTGATTCTGCTGGAGGTTGTGAGCGGGAAGATTGTGACGGAGAGGGAATTAGGCGGCGGTGAAGAGGAGGGGCGGATTAAGAAAATGGTGGATTTGGCGATTAGAGGGGAAGTGGAAGGGAAAGAAGAGGCGGTAATGGGGATTTTTAGATTAGGGTTTAGCTGTGTTAGTTTTTTGCCTCAAAAAAGACCCACCATGAAAGAGGCTCTCCAAGTTCTTGACAAAATTTCTTCCATCATTTCTTCTTCTAACACCTAA 2310 49.26 MMHTMKPSQLLALFSTFTFCFPCLALNSDGILLISLKHSILGDPLSVFANWNFYDDTPCSWRGVTCTDLRDYGGGWSDFLRVTALSLPGSQLLGSIPDELGRIEHLRLLDLSGNFFNGSLPTSIFNASELQILSLSNNVISGELPADIGGLKSLQVLNLSDNALAGKVPGNLTALKNLTVVSLRSNYFTGEIPGNFSSVEVLDLSSNLFNGSLPADFGGEKLRYLNFSYNKISSPIPLDFAKRIPMNATMDLSFNNLTGAIPQSIALLSQKTEAFAGNEDLCGKPLKHLCSIPSSLTTPPNVSESSSSSPAIAAIPKTIGSVPATQSPRGPNGTQTSQPQNAMKPITIAAIAVGDIAGIAILAVVILYVYHHRKRKNPNSKTPKSTEKKPPIDSEQDPQTNHKKSSSVLFCLANKGEETSEATSSSDGEEQREKPGTTHGGENRDSKKNGVLVTVDGETELELETLLKASAYILGASGGSIVYKAVLEDGTAFAVRRIGDVSVEKLRDFESQVRAIAKVRHQNLVKIRGFFWGEDEKLIIYDYVSNGCLSTSLHRKPSSSSSSQSHLSFEVRVKIARGIARGLAFIHDKKHIHGNLKPSNILLNSEMEPLIADLGLDKLLSGRSKIAIASSSARNFGSHRSTPNREYQDANGGSPSVSLGSAYQAPESLKNVKASPKWDVYSFGVILLEVVSGKIVTERELGGGEEEGRIKKMVDLAIRGEVEGKEEAVMGIFRLGFSCVSFLPQKRPTMKEALQVLDKISSIISSSNT 769
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 10779808 10784038 - CmPI595203_05g011330.1 Cmu05g1133 416047
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu05g1133 769 MobiDBLite consensus disorder prediction 425 451 - -
Cmu05g1133 769 Gene3D Ribonuclease Inhibitor 196 292 IPR032675 -
Cmu05g1133 769 MobiDBLite consensus disorder prediction 635 656 - -
Cmu05g1133 769 Pfam Leucine rich repeat 105 164 IPR001611 GO:0005515(InterPro)
Cmu05g1133 769 Gene3D Phosphorylase Kinase; domain 1 438 543 - -
Cmu05g1133 769 FunFam Probable leucine-rich repeat receptor-like protein kinase At2g33170 26 191 - -
Cmu05g1133 769 SUPERFAMILY Protein kinase-like (PK-like) 473 760 IPR011009 -
Cmu05g1133 769 Pfam Protein kinase domain 474 755 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cmu05g1133 769 MobiDBLite consensus disorder prediction 380 400 - -
Cmu05g1133 769 PANTHER OS05G0588300 PROTEIN 175 761 IPR050994 -
Cmu05g1133 769 MobiDBLite consensus disorder prediction 321 340 - -
Cmu05g1133 769 FunFam Leucine-rich repeat receptor-like protein kinase 198 292 - -
Cmu05g1133 769 Pfam Leucine rich repeat N-terminal domain 26 67 IPR013210 -
Cmu05g1133 769 SUPERFAMILY L domain-like 26 288 - -
Cmu05g1133 769 Gene3D Ribonuclease Inhibitor 26 195 IPR032675 -
Cmu05g1133 769 Gene3D Transferase(Phosphotransferase) domain 1 544 768 - -
Cmu05g1133 769 MobiDBLite consensus disorder prediction 375 451 - -
Cmu05g1133 769 Pfam Leucine Rich Repeat 177 198 IPR001611 GO:0005515(InterPro)
Cmu05g1133 769 Pfam Leucine Rich Repeat 221 241 IPR001611 GO:0005515(InterPro)
Cmu05g1133 769 Pfam Leucine Rich Repeat 199 218 IPR001611 GO:0005515(InterPro)
Cmu05g1133 769 ProSiteProfiles Leucine-rich repeat profile. 221 242 IPR001611 GO:0005515(InterPro)
Cmu05g1133 769 ProSiteProfiles Protein kinase domain profile. 468 764 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu02g0821 Cmu-Chr2:9583104 Cmu05g1133 Cmu-Chr5:10779808 1.70E-149 dispersed
Cmu05g1133 Cmu-Chr5:10779808 Cmu11g1388 Cmu-Chr11:26049690 3.80E-59 dispersed
Cmu05g1133 Cmu-Chr5:10779808 Cmu05g2303 Cmu-Chr5:32342006 7.30E-71 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
75536 PF00069 Pkinase 1.90E-30 CL0016 Cmu PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu05g1133 - - - 0.0