Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu05g1171 ATGTCTTCCCATATTCTCTACCTCCTTCTCTTCCTTACTTCTCTTCGTCTCTCTTCATCAGATGAACACTCGATGGAGTCGGTTCCTGATCTTCAAAATTCGATGTACCTAGCAGTTGATGGTTATCCATGCATTCGATTACTTAATCTTTCTGGAGAAATCGGCTGTTCAAATCCTGGACGAGAAAAGGTTGTAGTTCCAATGATTAACTTCAAAGATGCTAATGAGATATTGCAGCCATCTGCAATTTTAGTTTCAGTGGATGAAATCTCGAGTTTCTTTACTAGACTACAGGACGATTCTCATTTTGCAAGTAATGTTGGCGGTGTTCTAATTGAACCAGGAATTGAAATACAAAATAGAACGGAAGGATTTTCTCCTGCCCAAAAGTTTCCACAAGCTAAATTTGCTCCTTATAAAAACCTTGACTATGAATGGAACCCAATTGGATCTGGAATTATGTGGAATCAATATAACTTTCCTGTTTTCTTAATATCTGAGAGCAGCATTTCATCTATACAGGAAGCTGCTTCAAAAAATGTGAAGAATAAGAAAGATTACATATCTAATGTTGCTGAATTTGATCTGGTGATGCAGACAACTAAGGCTGGAACTCATAATTCAATGTCTTGTTTGAAAGAAGAAACATGCCTTCCATTAGGTGGATACAGTGTCTGGTCATCACTCCCTCCAATCAATACTTCTTCCTCTGATCAGTCTAAGCCCGTCATTCTCACAGTAGCTTCAATGGATTCTGCCTCTTTCTTCCGTGATAAAAGCATTGGTGCAGACTCCCCCATCTCTGGCCTGATTACATTGCTGGCTGCAGTTGATGCCCTTTCCCATGTGGATGGATTGGATGATCTTCATAAACAGCTTGTTTTTGGTGTCTTCACTGGAGAGTCCTGGGGCTACCTTGGTAGTAGGAGATTTTTACTTGAACTTGATTTACAGTCCGATGCTGTCAGTGGCCTTAACAATAGGTTAATTGATACGGTTTTTGAAATTGGATCTGTTGGAAAGAGCTCCAGTCATGGATTTGGAAAGTTTTTTGCTCACATGACAGAGGTTTCATCTTCCAAGAATGAGACATGGAACGCCTTGAAGCTTGCTCAAGAGTCACTTCCATTTGAGAACGTAGAAGTCTCACCAGCTAGTACTACAAATCCAGGGATACCTCCATCTTCGTTGATGGCATTTCTGGCAAAGAACCCGCAGATCTCTGGGGTGGTGTTAGAAGACTTTGACACTAGCTTTACCAATCATTTTTACCAGAGTCACCTCGATGATTTACATAATATAAACTCTTCGGCTATTGAAGCAGCTGCTTTACTTGTTGCCCGAACTGTTTACATTCTTGCAACCAACAAAAAGGAATTGAGTAGTTCTGCCCTAACTGCTATCAAAGTGAACACCTCGTTGGTTGAAGAGCTTATAGGATGTCTCTTGAATTGTGACCCTGGTCTCTCTTGTGAGTTGGTGAAGCGATATATTTCTCCCTCCAGTGTTTGTCCAAACCATTATGTTGGTGTTATCCTTGATGAACCTTCCTCTACTCCTTATCCTGGCTATGTTCATGACGTTTCAAGATTTGTTTGGAACTTTTTGGCTGACAGAACATCTAATCCTAAAGAGAATACTAGCTCAGTTTGTTCACAGAATTGTGACGACAAAAGTGAGGTGTGCATTGGAGCGGAGACTGGAAAGGGAACTTGTGTTATATCAACTACCAGATTCGTTCCAGCATACTCAACAAGATTGAAGTTTGAATCTGGATATTGGAATGTGCTTCATCCAAATTCATCAGATCTGCTGGGGGCTGTCGATCCAGTTTGGACAGAGAGCAATTGGAATACCATAGGACTCCGAATGTATACCATCCAAGCTACTGCTTATGATCGTTTTGTTTTACTTGGAGGCATTACTACCACAATCTTAGCTTATTTTGCAATAGTGCTGCATCTACACATGATTTACTTGCCTGAAAAGCCATCGACGAGCTCGAAGGCAGCAATGGAAGACGAAATTGATGATGATTCAAAGGAAACTGAATTTCAACATCGCATGGGGAATCAACCTCAGTTTCTTCCGTCTTCTTCCTCTAAACCTATTGGCTATCTTTCTGCATTTGTACAGGCTGCGGGAATAAAAGTTCTAGCGGCTCCCGTTTTTGGGAATTTCAAGGGAAGAAAAGAGAAGATGGATTATATGATGGATGGTCGTGGGGGTTATGGCGGTGGGTCAACTGATGAACAAGAAGGTTCTAATGATCGCAAGGGGAAAAAGACTTACCATCGTCATAATCCTTACCAGATTCAGCAACTTGAATCATTTTTCAGGGCATGCCCACACCCTGATGAAAATCAGCGGCGCCAGCTGAGTCAAGAGCTTGGTCTTGAGACCAAACAGATCAAATTTTGGTTTCAAAACAAGAGGACTCAAACAAAGGCTCAGAATGAGCGAGCAGACAACTCTTCGCTTCGGACAGAGAATGAAAAGATTCAATGTGAAAATCTTGCGATTAGAGAAGCGTTGAGGAATGTGATCTGTCCATCCTGTGGAGGTCCACCTTTTGGAGAGGAAGAACGGCAGCGTAATCTCCAAAAACTACGTCTTGAAAATTCTCACTTAAAAGAAGAGCATGACAAAGTGTCTAACCTTCTTGCCAAGTACATTGGAAAACCAATATCACAACTTGAATCACTATTGCCTGTTCTTGGATCTTCAATTGATTTGTCACCAAGAAGTTCCCTTACCCAAATAGTTGCAAGTCCTGCAGTCGATCTTATTTCTGATCCTGTGATATTAGATGGAGCAGCAACACCCTACCAATCAAGAGGTATTAATGATTTGGAAAATGCTCTTATGTTGGAAACTGCTGCAACTGCCTTGGAAGAGTTAATCAGACTTCTGAGGATTGATGAGCCTTTGTGGATGAAGACCCTGAATGATGGGAGGTATGTTCTCCATCGTGAAAGCTACGACAAAATATTTCCTAGACCAAATCACTTCAAATCTTCTAGTGGTCGTACTGAATCATCAAAAGCTTCAGGAGTGGTGACAATGAGTGCAATTCAATTGGTTGATTTTTTTTTAGATGCGGATAAATGGGCAGATCTTTTTCCAACCATCATTATGAATGCAGACACATTTCATATTATTGACCCTGGGATGCCTGGAAATCGCAGTGGTGCTTTGCAGTTGATGTATCAACAAATGCACATCTTTTCACCCCTCGTGTCTCCTCGGGACTTCTGCTTCCTTCGACACTGTCAGCAGATTGAGCTTGGTGTCTGGGTAATTGTGGATGTTTCATATGAAATCTTAAAGGATTGTGTCACCTCTGCCCGCTGCTGGAGGCTTCCTTCTGGATGCTTGATTCAAGAAATGCCCAATGGTTGCTCTAAGATTACCTGGGTCGAGCATGTGGAAGTGGATGATAAAACACAAACCCACCGGCTCTATCGAGATCTTGTGTTCAATACTTTGGCATATGGAGCCGATCGATGGTTTTTCACTCTTCAAAGGATGTGTGAGAGATTGGCTTACACTTTCAGGGATTGTGCACCTAGCCATGAACTTGGAGGAGTGTTAACTTCTCCTGAAGGTAGGAGAAGCATCACGAAGCTGTCACATAGAATGGTCAAAAATTTCTGTGGCGTACTGAGCATGTCAGGTAAATTAGATTTCCCTCAGTTATCTGAAGTGAACAACAGCGGTGTTCGAATATCTGTTCGGATTAGCTCGGAACTGGGGCAACCCAGTGGGACAGTCGTTAGTGCGGCGACATCTCTTTGGCTTCCCCTGCAACCTGAAATTATCTTTAATTTCTTCAGGGATGAGAAGGCCAGAGTTCAGTGGGATGTTCTCTCTTATGGCAACCCAGTACATGAAATTGCACACATCTTGACAGGAGTTCATCCAGGAAACTCAATATCGATAATTCGGAACAACATGCTAATTCTTCAAGAAAGCTGCATAGATCCGCTAGGATCCTTAGTGATATATGCACCCATCGACTTGCCTGCTATGAACATTGCAACAAGTGGTCAGGACCCATCAGGGATACCGATACTTCCATCAGGGTTTGTAATCACAGGGGATGGCCGTATGCATTCAGGAATTGGAGCTTCGACGAGTGCTACCTCAGGGAGGCCGAGCGGGTCTCTGTTAACCATAGCTTTTCAGATATTGGTGTCCAGTGTATCATCTTCAAAACAACTGAATGTGGAGTCTGTGGCAACAGTGAATACTCTTATTAGTGCCACAGTTCAGAGGATAAAGGCTGCATTGAATTGCTCTGGCTTGGATTGA 4314 42.35 MSSHILYLLLFLTSLRLSSSDEHSMESVPDLQNSMYLAVDGYPCIRLLNLSGEIGCSNPGREKVVVPMINFKDANEILQPSAILVSVDEISSFFTRLQDDSHFASNVGGVLIEPGIEIQNRTEGFSPAQKFPQAKFAPYKNLDYEWNPIGSGIMWNQYNFPVFLISESSISSIQEAASKNVKNKKDYISNVAEFDLVMQTTKAGTHNSMSCLKEETCLPLGGYSVWSSLPPINTSSSDQSKPVILTVASMDSASFFRDKSIGADSPISGLITLLAAVDALSHVDGLDDLHKQLVFGVFTGESWGYLGSRRFLLELDLQSDAVSGLNNRLIDTVFEIGSVGKSSSHGFGKFFAHMTEVSSSKNETWNALKLAQESLPFENVEVSPASTTNPGIPPSSLMAFLAKNPQISGVVLEDFDTSFTNHFYQSHLDDLHNINSSAIEAAALLVARTVYILATNKKELSSSALTAIKVNTSLVEELIGCLLNCDPGLSCELVKRYISPSSVCPNHYVGVILDEPSSTPYPGYVHDVSRFVWNFLADRTSNPKENTSSVCSQNCDDKSEVCIGAETGKGTCVISTTRFVPAYSTRLKFESGYWNVLHPNSSDLLGAVDPVWTESNWNTIGLRMYTIQATAYDRFVLLGGITTTILAYFAIVLHLHMIYLPEKPSTSSKAAMEDEIDDDSKETEFQHRMGNQPQFLPSSSSKPIGYLSAFVQAAGIKVLAAPVFGNFKGRKEKMDYMMDGRGGYGGGSTDEQEGSNDRKGKKTYHRHNPYQIQQLESFFRACPHPDENQRRQLSQELGLETKQIKFWFQNKRTQTKAQNERADNSSLRTENEKIQCENLAIREALRNVICPSCGGPPFGEEERQRNLQKLRLENSHLKEEHDKVSNLLAKYIGKPISQLESLLPVLGSSIDLSPRSSLTQIVASPAVDLISDPVILDGAATPYQSRGINDLENALMLETAATALEELIRLLRIDEPLWMKTLNDGRYVLHRESYDKIFPRPNHFKSSSGRTESSKASGVVTMSAIQLVDFFLDADKWADLFPTIIMNADTFHIIDPGMPGNRSGALQLMYQQMHIFSPLVSPRDFCFLRHCQQIELGVWVIVDVSYEILKDCVTSARCWRLPSGCLIQEMPNGCSKITWVEHVEVDDKTQTHRLYRDLVFNTLAYGADRWFFTLQRMCERLAYTFRDCAPSHELGGVLTSPEGRRSITKLSHRMVKNFCGVLSMSGKLDFPQLSEVNNSGVRISVRISSELGQPSGTVVSAATSLWLPLQPEIIFNFFRDEKARVQWDVLSYGNPVHEIAHILTGVHPGNSISIIRNNMLILQESCIDPLGSLVIYAPIDLPAMNIATSGQDPSGIPILPSGFVITGDGRMHSGIGASTSATSGRPSGSLLTIAFQILVSSVSSSKQLNVESVATVNTLISATVQRIKAALNCSGLD 1437
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 11470375 11512927 + CmPI595203_05g011710.1 Cmu05g1171 416085
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu05g1171 1437 Pfam Nicastrin 242 451 - -
Cmu05g1171 1437 Pfam Nicastrin small lobe 43 200 IPR041084 -
Cmu05g1171 1437 MobiDBLite consensus disorder prediction 740 764 - -
Cmu05g1171 1437 FunFam Homeobox-leucine zipper protein HDG1 748 834 - -
Cmu05g1171 1437 ProSiteProfiles START domain profile. 949 1183 IPR002913 GO:0008289(InterPro)
Cmu05g1171 1437 SUPERFAMILY Bet v1-like 951 1182 - -
Cmu05g1171 1437 ProSiteProfiles 'Homeobox' domain profile. 758 818 IPR001356 GO:0003677(InterPro)
Cmu05g1171 1437 Gene3D Zn peptidases 176 469 - -
Cmu05g1171 1437 Pfam Homeodomain 761 816 IPR001356 GO:0003677(InterPro)
Cmu05g1171 1437 SUPERFAMILY Bet v1-like 1201 1369 - -
Cmu05g1171 1437 Coils Coil 860 887 - -
Cmu05g1171 1437 SMART HOX_1 760 822 IPR001356 GO:0003677(InterPro)
Cmu05g1171 1437 Pfam START domain 960 1180 IPR002913 GO:0008289(InterPro)
Cmu05g1171 1437 SUPERFAMILY Zn-dependent exopeptidases 214 460 - -
Cmu05g1171 1437 FunFam Nicastrin 170 466 - -
Cmu05g1171 1437 ProSitePatterns 'Homeobox' domain signature. 793 816 IPR017970 GO:0000981(InterPro)|GO:0006355(InterPro)
Cmu05g1171 1437 CDD homeodomain 761 819 IPR001356 GO:0003677(InterPro)
Cmu05g1171 1437 Gene3D - 748 835 - -
Cmu05g1171 1437 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 750 1434 IPR042160 -
Cmu05g1171 1437 CDD START_ArGLABRA2_like 954 1179 - -
Cmu05g1171 1437 CDD M28_Nicastrin 39 618 - -
Cmu05g1171 1437 Gene3D - 958 1158 IPR023393 -
Cmu05g1171 1437 SMART START_1 958 1180 IPR002913 GO:0008289(InterPro)
Cmu05g1171 1437 Coils Coil 817 837 - -
Cmu05g1171 1437 SUPERFAMILY Homeodomain-like 747 819 IPR009057 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu04g1307 Cmu-Chr4:27375643 Cmu05g1171 Cmu-Chr5:11470375 4.00E-209 dispersed
Cmu05g1171 Cmu-Chr5:11470375 Cmu09g1115 Cmu-Chr9:11577959 1.20E-143 dispersed
Cmu05g1171 Cmu-Chr5:11470375 Cmu06g0005 Cmu-Chr6:97544 2.70E-159 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
6180 PF01852 START 2.40E-35 CL0209 Cmu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu05g1171 K06171 - csv:101205899 1303.5