Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu05g1214 ATGGAGAATTTAATGGGTTTGCTAAGAATCCATGTGTTTAGAGGTGTTAATCTTGCTGTAAGAGATGTTGTTAGCAGTGATCCTTATGTTATTTTCAAGATGGGCAAACAGAAATTAAAGACTCGAGTAGTGAAGCAAAACATCAATCCAGAATGGAATGAAGATCTAACTCTATCAATCCAAGATCCAAATCTCCCAGTGAATGTGCTCGTATACGACAGAGACTTATTCTCACTTGACGACAAGATGGGGGATGCAGAGTTCGACGTTCGACCGTTCATGGAAGCGGTGAAGATGAGATTGAACAATCTCCCAAGTGGCACCATCATAACAAAGATTCAACCAAGTAGGGAAAATTGTTTGTCTGAAGAAAGTTGCATAGTTTGGGTAAATGGACAAGTTATTCAGAAAATGTTTCTAAGGTTAAGAAATGTGGAGTCTGGTGAAATTGAGCTGCAGTTGCAATGGATTGATATTCCTGGCTCTAGGGGATTGTAG 498 39.56 MENLMGLLRIHVFRGVNLAVRDVVSSDPYVIFKMGKQKLKTRVVKQNINPEWNEDLTLSIQDPNLPVNVLVYDRDLFSLDDKMGDAEFDVRPFMEAVKMRLNNLPSGTIITKIQPSRENCLSEESCIVWVNGQVIQKMFLRLRNVESGEIELQLQWIDIPGSRGL 165
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 12500559 12502208 - CmPI595203_05g012140.1 Cmu05g1214 416128
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu05g1214 165 ProSiteProfiles C2 domain profile. 1 103 IPR000008 -
Cmu05g1214 165 SMART C2_3c 7 102 IPR000008 -
Cmu05g1214 165 Pfam C2 domain 6 93 IPR000008 -
Cmu05g1214 165 PANTHER PROTEIN C2-DOMAIN ABA-RELATED 4 1 163 IPR044562 -
Cmu05g1214 165 Gene3D C2 domain 4 160 IPR035892 -
Cmu05g1214 165 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 2 91 IPR035892 -
Cmu05g1214 165 CDD C2_ArfGAP 6 148 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu04g1098 Cmu-Chr4:25582353 Cmu05g1214 Cmu-Chr5:12500559 2.20E-64 dispersed
Cmu05g1214 Cmu-Chr5:12500559 Cmu07g0642 Cmu-Chr7:9786660 7.80E-47 dispersed
Cmu05g1214 Cmu-Chr5:12500559 Cmu06g1488 Cmu-Chr6:26154725 1.40E-67 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu05g1214 - - - 0.0