Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu05g1223 ATGATCTTTTCATGGAGGAAAAACAAATTTGGGTTTCTTACCAAGTTGAAGAAAGAGCTTCCGGGGGTCGATTCGGGTTCGGAAATTGCGATTCCTTCGCATTATATGTGTCCGATTTCGCTTGATTTGATGAAGGACCCTGTGATTTTGTCCACTGGGATTACTTATGATAGAGAGAGTATCGAGAAGTGGATTGAGGGGGGAAATTTTTCATGTCCTGTGACGAAACAGGATTTGATGAATTTCGACCTAATCCCTAATCATGCGTTGAGGAGGTTGATCCAAGATTGGTGTGTTGCGAATCGTTCATACGGGATCGAGCGGATTCCGACGCCGCGGATTCCGGTTACCCCGTATGAAGTTAAGGAGATTTGTTCGAGAATTTCGGTCGCGACTCAAAGAAGCGACTCGAAGAGGTGCAGTGAATTAGTTGGTAAGATCAGGAATTGGGCAAAAGAGAGCGAGAGGAATCGGAGGTGTATTGTGAATGGAGGAACTGGGGATGTTTTAGCAGCTTCGTTTGAGCATTTTGCTGGTGTTTCGATTGAGAAACATGTGGGTTTGTTGGAGGAGATTTTGTTGGTTTTGGCTTGTGTGTTCCCAGTCGCCATTGAAGGCTTATCCAAGCTCGGATCTGCTGATTCTTTGAGAAGTTTGGTTTCCTTCTTAATTGGCAAAGATCTTTCTCCCAAACAGAACGCAGTTTTTGTTCTGAAAGAACTCTTGTCAGCTGATCGAAGATATGTTAATTCATTGGCTGCCATTGAAGGAGTATCAGAAGCTTTAGTTAGCATTATCAGGGATCCTCTTTGCCCCTCTGCTACAAAAGCATCTCTTACAGCCATTTTTTACATGATTTTACCATCAGAAATCGGTGAGAAAATGGCATTGAAATTTGTGGAACTTGGCTTGGTCTCTCAGCTACTAGAATTTTTGGTAGATGCAGAGAAAAGTCTATGTGAGAAAGCTTTGGGAATTTTGGATGGAATCTGTGATTACAAACAAGGAAGAGAGAAGCTTTACGAGAATGCACTAACCATTCCACTCTTAGTCAAGAAGATCCTAAGAGTTTCAGAGTTAGCCACTGAATATTCTCTGTCAATATTGTTGAAGCTCTGCAAGAGTGGTGAGAAGGGTGAAAATGAGGTGAGGGTGGAAGCAGCCCAACTGGGTGCTTTCCAGAAGATATTGGTTCTCTTACAGCTAGGTCTTCAATGGCTGATACAACGAGATTTCAAAGGATGTGGAGGACTTCATAAATGCAAGATGTGCCATGCAAAAAAAGGCTTTATGGGACTACGAGTGATGTCTCTCTACTTGGGAGAGTTTCTTGTAGTTGTCCGCACCAGGGGTTATCTTCTTTGA 1365 42.93 MIFSWRKNKFGFLTKLKKELPGVDSGSEIAIPSHYMCPISLDLMKDPVILSTGITYDRESIEKWIEGGNFSCPVTKQDLMNFDLIPNHALRRLIQDWCVANRSYGIERIPTPRIPVTPYEVKEICSRISVATQRSDSKRCSELVGKIRNWAKESERNRRCIVNGGTGDVLAASFEHFAGVSIEKHVGLLEEILLVLACVFPVAIEGLSKLGSADSLRSLVSFLIGKDLSPKQNAVFVLKELLSADRRYVNSLAAIEGVSEALVSIIRDPLCPSATKASLTAIFYMILPSEIGEKMALKFVELGLVSQLLEFLVDAEKSLCEKALGILDGICDYKQGREKLYENALTIPLLVKKILRVSELATEYSLSILLKLCKSGEKGENEVRVEAAQLGAFQKILVLLQLGLQWLIQRDFKGCGGLHKCKMCHAKKGFMGLRVMSLYLGEFLVVVRTRGYLL 454
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 12705638 12707914 + CmPI595203_05g012230.1 Cmu05g1223 416137
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu05g1223 454 Gene3D - 121 403 IPR011989 -
Cmu05g1223 454 PANTHER WDSAM1 PROTEIN 28 402 IPR045185 GO:0061630(InterPro)
Cmu05g1223 454 SUPERFAMILY ARM repeat 188 397 IPR016024 -
Cmu05g1223 454 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 15 108 IPR013083 -
Cmu05g1223 454 ProSiteProfiles U-box domain profile. 30 104 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Cmu05g1223 454 CDD RING-Ubox_PUB 32 84 IPR045210 -
Cmu05g1223 454 SMART Ubox_2 34 97 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Cmu05g1223 454 Pfam U-box domain 31 102 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Cmu05g1223 454 SUPERFAMILY RING/U-box 25 107 - -
Cmu05g1223 454 FunFam RING-type E3 ubiquitin transferase 25 107 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu05g1223 Cmu-Chr5:12705638 Cmu07g0601 Cmu-Chr7:7815671 3.90E-112 dispersed
Cmu05g1223 Cmu-Chr5:12705638 Cmu10g2558 Cmu-Chr10:32371144 3.20E-42 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu05g1223 - - - 0.0