Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu05g1229 ATGGAGTTCCCCCAAGGAATTTTAGCGGCGGCGGTTCTGAGTTTCGCTTTTCTGGGTTTTGTCCGGATGGATCTGGCCTCTGACAGGGCCGCGCTGGTGGGGTTTCGGGCGGCGATGGGTGGCCGGCCCCGATTAGAGTGGAATCTCTCCGATGTATCACCCTGTTCTTGGGCTGGTGTTAACTGTGACAGGAGTGGGGTTTTTGAGCTCCGGCTTCCGGCAATGGGGCTCTCCGGTGAGCTTCCCTTGGGGCTTGGGAATTTGACGCAGTTACAAACTCTTTCTCTGCGGTTTAATGCTCTGTCTGGACGGATTCCGGCGGATTTTGCGAATCTTCGTGGGCTGAGGAATCTTTACTTGCAGGGGAACTTGTTTTACGGCGAGATTCCGGCGTTTCTGTTCAATTTGCAGAATCTTGTTCGGTTGAACATGGCGGACAACAATTTTTCAGGTGAGATTTCATCTGGGTTCAACAATCTCTCCCGTTTGGCTACTCTGTATTTACAGAACAATCAATTTACCGGAGTAGTTCCTGACTTAAATCTCACTCTTGAACAATTTAATGTCTCCTTTAATCGATTGAATGGTTCAATTCCCTCGAGGCTCTCTAGTTTTCCGGCGAGTTGTTTTGAGGGGAATTTGCTCTGTGGGGCGCCATTGTTACTCTGTAACTCGACAGCCACCGAGCCTGGTCGAAAGTCGAAGCTCTCAGGCGGGGCGATTGCTGGAATTGTGATCGGTGGTTTGTTTGTTTTGGTGTTGATTTTGGTTGTTTTGATTCTTGTGTGTCAAAGAAAGAGTAAAGGGAAATCGGAGTCGAAAGAGGGGGTTCGGTCGGCTGGTGAGGTTGGGGTGCCGAGAGAGAAGATGACGACAGTGGAAGGAAGTAGCGAAAGGGTAAGCATAGATCATTTGACTATAGCGAAATCATCAGGGAAGGGCGGGGAAAAGGATAAGAAATTGGTGTTCTTTGGTAATGTGGGAAATGTGTTTGATTTGGAGGACTTGTTGAGGGCGTCGGCGGAGGTCCTCGGGAAGGGGGCGTTCGGGACAGCGTATAAGGCGACACTGGAGACAGGGATGGTGGTGGCTGTGAAGCGGTTGAAGGAGATGACTGCGGCGGAGAAGGAGTTCAGGGAGAAAATGGAGGAGGTGGGGAGGATGAAGCATGAAAATTTAGTTCCTCTTAGAGCTTATTATTACAGCAGAGAGGAAAAGCTTTTGGTTTATGATTACATGCCAATGGGAAGCTTGTCTGCACTTTTACATGGTAGTAGAGAATCAGGGAGGACTCCGTTGAATTGGGAAGCAAGGTGTGGCATAGCGCTGGGAGTTAGCCGTGGGATTGATTACCTTCATTCTCAAGGCCCTACCATCTCTCATGGCAACATCAAATCCTCTAATGTTCTCCTCACCAGATCATATGAAGCATGTGTATCCGACTTTGGCCTTGCACAACTAGCCATGTCCCCATCAGCTCCAAGTCGTGTCGCTGGGTACCGAGCCCCAGAGATCACGGATTCTCGAAAGGTATCACAAAAAGCAGATGTTTATAGCTTCGGAGTGTTGTTATTGGAGATGCTAACAGGAAAATCTCCTACACATTCTATCTTCAATGATGAAGCTGTGGACCTTCCTAGATGGGTTCAATCTGTGGTTCAAGAGGAATGGACAGCTGAAGTGTTTGATGAACAACTTCTTAGGTACCAAAATGTTGAGGAGGAGATGGTTCAACTCTTAGAACTCGCTCTGCAATGTACCGTCCCGTATCCTGATAATCGTCCTGGAACGGACGAGATTGTTCGACGTATCGAAGAACTTTGTCGATCAACCTCCCAAAAACAGAGTGAGGCAATTGACAATGATGGAAATAATGGTATTTCCACACAGTTTCATTCACTAAACTCACCTCATCCACCATCTGCAGAGTAG 1932 48.19 MEFPQGILAAAVLSFAFLGFVRMDLASDRAALVGFRAAMGGRPRLEWNLSDVSPCSWAGVNCDRSGVFELRLPAMGLSGELPLGLGNLTQLQTLSLRFNALSGRIPADFANLRGLRNLYLQGNLFYGEIPAFLFNLQNLVRLNMADNNFSGEISSGFNNLSRLATLYLQNNQFTGVVPDLNLTLEQFNVSFNRLNGSIPSRLSSFPASCFEGNLLCGAPLLLCNSTATEPGRKSKLSGGAIAGIVIGGLFVLVLILVVLILVCQRKSKGKSESKEGVRSAGEVGVPREKMTTVEGSSERVSIDHLTIAKSSGKGGEKDKKLVFFGNVGNVFDLEDLLRASAEVLGKGAFGTAYKATLETGMVVAVKRLKEMTAAEKEFREKMEEVGRMKHENLVPLRAYYYSREEKLLVYDYMPMGSLSALLHGSRESGRTPLNWEARCGIALGVSRGIDYLHSQGPTISHGNIKSSNVLLTRSYEACVSDFGLAQLAMSPSAPSRVAGYRAPEITDSRKVSQKADVYSFGVLLLEMLTGKSPTHSIFNDEAVDLPRWVQSVVQEEWTAEVFDEQLLRYQNVEEEMVQLLELALQCTVPYPDNRPGTDEIVRRIEELCRSTSQKQSEAIDNDGNNGISTQFHSLNSPHPPSAE 643
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 12851311 12853398 + CmPI595203_05g012290.1 Cmu05g1229 416143
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu05g1229 643 SUPERFAMILY L domain-like 46 205 - -
Cmu05g1229 643 MobiDBLite consensus disorder prediction 612 643 - -
Cmu05g1229 643 SUPERFAMILY Protein kinase-like (PK-like) 342 604 IPR011009 -
Cmu05g1229 643 Gene3D Transferase(Phosphotransferase) domain 1 413 631 - -
Cmu05g1229 643 Gene3D Ribonuclease Inhibitor 25 209 IPR032675 -
Cmu05g1229 643 Pfam Leucine Rich Repeat 138 160 IPR001611 GO:0005515(InterPro)
Cmu05g1229 643 Pfam Leucine Rich Repeat 90 112 IPR001611 GO:0005515(InterPro)
Cmu05g1229 643 Coils Coil 371 391 - -
Cmu05g1229 643 ProSitePatterns Protein kinases ATP-binding region signature. 344 366 IPR017441 GO:0005524(InterPro)
Cmu05g1229 643 CDD STKc_IRAK 344 607 - -
Cmu05g1229 643 FunFam Probable inactive receptor kinase RLK902 25 181 - -
Cmu05g1229 643 Pfam Protein kinase domain 342 602 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cmu05g1229 643 FunFam protein STRUBBELIG-RECEPTOR FAMILY 8 413 618 - -
Cmu05g1229 643 ProSiteProfiles Protein kinase domain profile. 338 607 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cmu05g1229 643 SMART LRR_typ_2 88 111 IPR003591 -
Cmu05g1229 643 SMART LRR_typ_2 160 183 IPR003591 -
Cmu05g1229 643 SMART LRR_typ_2 112 136 IPR003591 -
Cmu05g1229 643 Pfam Leucine rich repeat N-terminal domain 26 63 IPR013210 -
Cmu05g1229 643 PANTHER OS05G0588300 PROTEIN 11 612 IPR050994 -
Cmu05g1229 643 FunFam pollen receptor-like kinase 1 307 412 - -
Cmu05g1229 643 Gene3D Phosphorylase Kinase; domain 1 308 412 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu01g0833 Cmu-Chr1:9874170 Cmu05g1229 Cmu-Chr5:12851311 8.20E-137 dispersed
Cmu05g1229 Cmu-Chr5:12851311 Cmu11g0257 Cmu-Chr11:3111452 1.10E-123 dispersed
Cmu08g0298 Cmu-Chr8:7363483 Cmu05g1229 Cmu-Chr5:12851311 6.40E-09 dispersed
Cmu05g1229 Cmu-Chr5:12851311 Cmu04g1087 Cmu-Chr4:25473480 2.10E-164 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
75537 PF00069 Pkinase 1.70E-38 CL0016 Cmu PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu05g1229 - - - 0.0