Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu05g1241 ATGAAGCGAGGCCACACCCATCAATCCTCAAATTCCGCCGCCGCAGCCGCTGGCAACCCCAAGACATGGGCGGTCGAGGATGAGGAAGACGACGACAAGCATCTAGCTGCTCTTGGGTACAATGTCCGGTCGTCGGACATGGCGGACGTAGCTCTGAAACTGGAACAGCTAGAAATGGTAATGGGTTTGTCGGAAGAAGATGGAATTTCTCACCTCTCTTCCAATACAGTCCATTACAATCCCTCCGATGTTTCTTCTTGGGTTCAAAGCATGCTCGCTGAACTCAATACTCCGCTTCAATCCCAAGGAATAACCCACGATCCTGTTCTTGCCATAGCTGAATCCACTTCCTCCTCCATCGCCGCCGCCTTCACCGACGATTCTGAGTATGATCTCAGAGCCATTCCTGGAGTTGCTGCTTTCCCACAAATCGATTCCACCAACCCCAGAAAGCGATTCAAGAAATCAGATTCCGAATCGCTTCTTGTTACTGCATCTTCTTCTTCTTCTTCGTCGTCGTCGGAGCAGTCGCGCTCGGTGGTTCTGGTGGATTCCGTCGAGACTGGCGTCCGTCTGGTCCACAGCCTTCTCGCCTGCGCCGACGCCGTCCACACAAACAATCTCAACCTTGCCGAGGCTCTACTAAAACACATCAGAATCCTCGTTGAAGCTCAGGCCGGCGCTATGAGAAAAGTCGCCGGCTATTTCGCTCAAGCCCTCTCTCGCCGGATTTACAGATTTTACCCACAAAAGCCCTTCGATTATTCATCTTCATACACCGATCTTCTCCAAATGCATTTCTATGAATCTTGCCCCTATCTGAAATTCGCCCATTTCACTGCCAATCAAGCCATTCTCGAATCCGTTGGTTCTGCTGGTACCGTCCACGTCGTCGATTTCAACCTCCAGCAAGGCCACCAATGGCCGCCGTTGATTCAGGCCTTCGCACTCCGACCAGGTGGGCCTCCGGCGTTTCATCTTACTGGAATCCATCCCCCGCCGGAGGAAAATTCCACCGACGGATTACAGGAAGTGGGTTCGAAATTGGCGCAATTCGCGGATAAATTCGGCGTAAAATTCGAATTTCGTGGGTTCTTCTGCAACAATTTGGCCGATCTGGAACCGTCAATACTCAATTTAGAAACAGAAACCGTCGCTATAAACTCCATTTTCGAGCTCCACCGGCTACTGGCCAATCCGGGCGCGATTGAAAAAGCTCTAACAACAATCAAAGAACTTAACCCCAAAATCGTCACCGTCGTGGAGCAGGTCGCCGACCACAACGGACCGTCGTTCGTAGAACGATTCACAGAAGCTCTACACTATTATTCGAGCTTATTCGATTCGTTAGAAGGGTCGCCGGCAGGGGAGGAGGATGTGGTGAGGTCAGAGGAATATTTAGGGAGACAAATCTGCAACGTAGTGGCGTGTGAAGGTTCCGACCGTGTCGAGCGTCATGAAACGGTGGCGCAGTGGCGGAGCCGGTTACGCTCGAGTGGATTCGAGATGGTTCATATGGGTTCGAACGCTTTCAAGCAGGCCAGTACTTTGCTGGCGGCTCTGTTCGGAGGTGGAAATGGATACAGAGTTGAAGAGAATAATGGGAGTTTGACGTTGGGATGGCACACTCGGCCGCTCATCGCCACTTCGGCCTGGACGCTGGCCGGAGGCGGGGACAGCGGCGAGTCGACTCGGCCGAGTTCAGGACAGATCTGA 1716 52.51 MKRGHTHQSSNSAAAAAGNPKTWAVEDEEDDDKHLAALGYNVRSSDMADVALKLEQLEMVMGLSEEDGISHLSSNTVHYNPSDVSSWVQSMLAELNTPLQSQGITHDPVLAIAESTSSSIAAAFTDDSEYDLRAIPGVAAFPQIDSTNPRKRFKKSDSESLLVTASSSSSSSSSEQSRSVVLVDSVETGVRLVHSLLACADAVHTNNLNLAEALLKHIRILVEAQAGAMRKVAGYFAQALSRRIYRFYPQKPFDYSSSYTDLLQMHFYESCPYLKFAHFTANQAILESVGSAGTVHVVDFNLQQGHQWPPLIQAFALRPGGPPAFHLTGIHPPPEENSTDGLQEVGSKLAQFADKFGVKFEFRGFFCNNLADLEPSILNLETETVAINSIFELHRLLANPGAIEKALTTIKELNPKIVTVVEQVADHNGPSFVERFTEALHYYSSLFDSLEGSPAGEEDVVRSEEYLGRQICNVVACEGSDRVERHETVAQWRSRLRSSGFEMVHMGSNAFKQASTLLAALFGGGNGYRVEENNGSLTLGWHTRPLIATSAWTLAGGGDSGESTRPSSGQI 571
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 13176955 13178670 + CmPI595203_05g012410.1 Cmu05g1241 416155
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu05g1241 571 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 171 552 IPR005202 GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0009723(PANTHER)|GO:0009737(PANTHER)|GO:0009863(PANTHER)|GO:0009867(PANTHER)|GO:0009938(PANTHER)|GO:0010187(PANTHER)|GO:0042538(PANTHER)|GO:0043565(PANTHER)|GO:2000033(PANTHER)|GO:2000377(PANTHER)
Cmu05g1241 571 FunFam DELLA protein GAI 30 95 - -
Cmu05g1241 571 Pfam Transcriptional regulator DELLA protein N terminal 32 98 IPR021914 -
Cmu05g1241 571 Gene3D - 31 95 IPR038088 -
Cmu05g1241 571 SMART DELLA_2 32 105 - -
Cmu05g1241 571 ProSiteProfiles GRAS family profile. 183 553 IPR005202 -
Cmu05g1241 571 MobiDBLite consensus disorder prediction 1 29 - -
Cmu05g1241 571 Pfam GRAS domain family 192 553 IPR005202 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu03g1456 Cmu-Chr3:10331796 Cmu05g1241 Cmu-Chr5:13176955 1.90E-175 dispersed
Cmu05g1241 Cmu-Chr5:13176955 Cmu06g1103 Cmu-Chr6:21478128 9.40E-116 dispersed
Cmu05g1241 Cmu-Chr5:13176955 Cmu01g1880 Cmu-Chr1:32360723 1.50E-44 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
6185 PF03514 GRAS 7.70E-124 CL0063 Cmu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu05g1241 K14494 - csv:101203095 977.622