Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu05g1264 ATGCGGATGAGTTGTAATGGTTGCAGAGTACTTCGCAAAGGTTGCAGTGAAAATTGCAGTATTCGACCTTGTTTGCAGTGGATCAAGACTCCTGAATCTCAGGCTAACGCTACCGTTTTTCTCGCTAAGTTCTATGGCCGTGCTGGTCTCATGAACCTCATCAACGCGGGTCCTGATCATCTCCGTCCTGCGATTTTTAGATCTCTTCTCTACGAGGCTTGTGGCCGGATTGTGAATCCGATTTACGGATCGGTTGGATTGTTGTGGTCTGGTAGTTGGCAGCTTTGTCAGGCGGCTGTAGAGGCCGTACTTAAAGGTGCTCCGATCACGCCGATCAACTCCGAGGCAGCGGCTACTGGCGATGGACCACCGTTGAAGGCCTACGACATTCGTCACGTTTCCAAGGATGAAAACTCCGTCGCGTCCAACGATGGTGGAGCCAATCGGCGAGTTAAGACTCGGTGCCGGTTCAAGCGGTCGGCTGTGAAGGCGAAAGGGAGTAAAGGAATCGACTCTACTGTCGATGAGTCGACTCGGCGATTCTGCTCTACCGAGTTGAACAGGTCGTCGAGTGGTGAGTCGTCGTTGAGTCACCAATCCGACTCGCGGCATCTCGAGAACGAGAGTAAAGAAACCGAGAGCATGATTTCAGTGGAGACGGCGGAGGTTTCTCCTCCTCCGATGCCGTCTGTTTTGTTCCGATCGGAATCCAGTTCGGTACTGAAATCCACGGGCCAGGACGGCGGCGTAGTGGCAATTCCGCAAAGTGAATTAGCTCTAGAACTAACCCTGGGGATGGAGCCGGCGTTACGTGCCCAGCACGTGATTCCAATGAAGAAGCGAAAGATAGAGGCCGACGTTGGGTTCAGGCCCAATAACGACACGTGCAATACAGTTTTGGGCCTTGATTTTTCAGCCTGA 921 52.77 MRMSCNGCRVLRKGCSENCSIRPCLQWIKTPESQANATVFLAKFYGRAGLMNLINAGPDHLRPAIFRSLLYEACGRIVNPIYGSVGLLWSGSWQLCQAAVEAVLKGAPITPINSEAAATGDGPPLKAYDIRHVSKDENSVASNDGGANRRVKTRCRFKRSAVKAKGSKGIDSTVDESTRRFCSTELNRSSSGESSLSHQSDSRHLENESKETESMISVETAEVSPPPMPSVLFRSESSSVLKSTGQDGGVVAIPQSELALELTLGMEPALRAQHVIPMKKRKIEADVGFRPNNDTCNTVLGLDFSA 306
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 13840253 13841266 - CmPI595203_05g012640.1 Cmu05g1264 416178
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu05g1264 306 MobiDBLite consensus disorder prediction 184 198 - -
Cmu05g1264 306 MobiDBLite consensus disorder prediction 184 214 - -
Cmu05g1264 306 MobiDBLite consensus disorder prediction 199 214 - -
Cmu05g1264 306 PIRSF AS2 1 301 IPR017414 -
Cmu05g1264 306 PANTHER LOB DOMAIN-CONTAINING PROTEIN 38 1 267 - GO:0010468(PANTHER)
Cmu05g1264 306 Pfam Lateral organ boundaries (LOB) domain 4 102 IPR004883 -
Cmu05g1264 306 ProSiteProfiles LOB domain profile. 3 109 IPR004883 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu05g1264 Cmu-Chr5:13840253 Cmu05g2328 Cmu-Chr5:32521317 1.40E-52 dispersed
Cmu05g1264 Cmu-Chr5:13840253 Cmu06g1539 Cmu-Chr6:26649842 9.00E-73 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
6187 PF03195 LOB 1.80E-24 No_clan Cmu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu05g1264 - - - 0.0