Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu05g1341 ATGCTTCCCAAATCCACCGGAATCCTCTGGCTTGACGCCGACCATGATGACTCCTCTTCTTGGTCCAGAACCAACCACCACACCGACGACGCCATCGCCATTTCCGCCGCCGGCTCCATTTCCTCCTTCAAATCCATCCTCGAATCCGACTGGTATATCAACTCTACTACTCCTCTTAATCCTTCTCACCAAGATTTCCATTCCCTTTCTTCTCACCCCGACATTCGAGACCTTCCTTTCTCCTCCAATCCTTCTGATAACTTCCTCTTACACCCTATAGATTCCTCCTCTTCTTGCTCTCCTTCTCACGCTTTTGCTCTCGATCCTTCCCATTCCCACTCCAGCTTGCCTCCTCACAAATCATCTTGTTTCTCTTCTCTTCTTAACGTTGTCTGCAGCAATAATTTTGATAATGCCTTCGATTTAGGCGGTGAGAGTGGTCTGCTTGGATCTTACCCAGGGAACCAAGCTTCCAATTCCTCCGTTTTGATGGGATTCACTGGCATTTCCTCTCTTCCTCAAATCGGTAATCAGGAGCTCAGCTTAAACAACTCGGAGTTTCCGGCGACTCGGTTGCTTCCGGTCGCCGATAACCCTCCTGCATTCGGAGCTGGATTTAATCCGGCGGCTGCTTTCGAGAGCTACGATGCCTGCGGGAATGCTCTGTTTCAGAACAGGTCTAAGGTTTTGAGACCTCTCGAAGTGTTCCCGCAGGTCGGTGCGCAGCCGACGCTGTTCCAGAAGCGGGCGGCGCATCGAGTTGGCTCTGCCGGACCTGATAAACTAGAGAGTTTGGAGGTTTCGGGTTTTAAATTAGGAGAAGGCTCAATGTGGACGCCGAATTTGGAGAGCCTGAGGAAGATGACCGGCGACGAGGACATTGAGGACGGCAGCGTGGATGTTTCTCGCTTGAATTACGATTCCGACGAACCCAATGAGTATAATAAGCAAGAGGACAATGTTAACACTAAAAACTGCGGAAGCAATTCCAATGCCAACAGTACGGTAACTGGCGGAGACCAGAAGGGGAAGAAGAAGGGGCTGCCGGCGAAAAATCTCATGGCAGAGCGGCGGCGGAGAAAGAAACTGAATGATAGACTTTACATGCTTAGGTCCGTGGTACCCAAGATAAGCAAGATGGATAGAGCTTCAATACTTGGAGACGCCATTGACTATTTGAAGGAGCTTCTTCAAAGGATAAATGATCTCCATAATGAACTCGAGTCTACTCCTCCTGGTTCTTTGTTGCAGCCCTCTGCGAGCTTTCACCCTTTGACGCCGACGCTGCCAACTCTTCCCTGTCGTGTCAAAGAGGAGCTGTGTCCAAGCTCCTTGTCCAGCCCCAATACCCAGCCTGCCAGGGTTGAAGTCCGGGTCAGAGAAGGCAGAGCTGTCAATATTCACATGTTTTGTTCTCGCAAGCCGGGTCTCTTGCTATCCATCATGAGGGCTCTGGATAACCTTGGCTTGGACATCCAACAAGCTGTAATCAGCTGTTTCAATGGATTTGCTTTAGACGTCTTTCGCGCTGAGCAATCCAAGGAAGGTCAGGAGATCTTGCCTGAGCAAATAAAAGCAGTGCTATTGGATTCAGCTGGTTTACATGGCATTATATAA 1617 49.78 MLPKSTGILWLDADHDDSSSWSRTNHHTDDAIAISAAGSISSFKSILESDWYINSTTPLNPSHQDFHSLSSHPDIRDLPFSSNPSDNFLLHPIDSSSSCSPSHAFALDPSHSHSSLPPHKSSCFSSLLNVVCSNNFDNAFDLGGESGLLGSYPGNQASNSSVLMGFTGISSLPQIGNQELSLNNSEFPATRLLPVADNPPAFGAGFNPAAAFESYDACGNALFQNRSKVLRPLEVFPQVGAQPTLFQKRAAHRVGSAGPDKLESLEVSGFKLGEGSMWTPNLESLRKMTGDEDIEDGSVDVSRLNYDSDEPNEYNKQEDNVNTKNCGSNSNANSTVTGGDQKGKKKGLPAKNLMAERRRRKKLNDRLYMLRSVVPKISKMDRASILGDAIDYLKELLQRINDLHNELESTPPGSLLQPSASFHPLTPTLPTLPCRVKEELCPSSLSSPNTQPARVEVRVREGRAVNIHMFCSRKPGLLLSIMRALDNLGLDIQQAVISCFNGFALDVFRAEQSKEGQEILPEQIKAVLLDSAGLHGII 538
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 16333750 16336632 - CmPI595203_05g013410.1 Cmu05g1341 416255
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu05g1341 538 MobiDBLite consensus disorder prediction 318 340 - -
Cmu05g1341 538 CDD ACT_UUR-ACR-like 467 527 - -
Cmu05g1341 538 SUPERFAMILY ACT-like 465 527 IPR045865 -
Cmu05g1341 538 FunFam BHLH transcription factor 343 411 - -
Cmu05g1341 538 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 350 415 IPR036638 GO:0046983(InterPro)
Cmu05g1341 538 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 347 396 IPR011598 GO:0046983(InterPro)
Cmu05g1341 538 CDD bHLH_AtAMS_like 350 414 - -
Cmu05g1341 538 ProSiteProfiles ACT domain profile. 466 538 IPR002912 -
Cmu05g1341 538 Coils Coil 390 410 - -
Cmu05g1341 538 Gene3D - 341 410 IPR036638 GO:0046983(InterPro)
Cmu05g1341 538 Pfam Plant bHLH transcription factor, ACT-like domain 455 528 IPR054502 -
Cmu05g1341 538 MobiDBLite consensus disorder prediction 305 348 - -
Cmu05g1341 538 Pfam Helix-loop-helix DNA-binding domain 354 396 IPR011598 GO:0046983(InterPro)
Cmu05g1341 538 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 304 533 IPR051358 GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0043565(PANTHER)
Cmu05g1341 538 SMART finulus 353 402 IPR011598 GO:0046983(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu03g1002 Cmu-Chr3:4648530 Cmu05g1341 Cmu-Chr5:16333750 3.80E-137 dispersed
Cmu05g1341 Cmu-Chr5:16333750 Cmu11g1484 Cmu-Chr11:27146309 2.70E-32 dispersed
Cmu05g1341 Cmu-Chr5:16333750 Cmu08g1128 Cmu-Chr8:23637418 4.20E-33 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
6192 PF00010 HLH 2.20E-09 No_clan Cmu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu05g1341 - - - 0.0