Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu05g1427 ATGTTTTTCCCTTGCTCCAGCGGCGGCGATGGTGGCGGACGACTGTCGGCGTATCATCATGCCGACATGTCATCTGTTTCCGGGTCTGATATATTTGGGAATTTTCACGGCGGCGATATGGAGGTAAGTGGGGTTTTGGGGATGAAGACAGAGATGGATGCGGCGGCGGCGACGGCGGTGGAAGCGGACGGCGGCGGAAAAAAGAAAGGGGAGAAGAAGGTGAGGAAACCAAGATATGCTTTTCAGACAAGAAGCCAAGTTGACATTCTTGACGATGGATATCGTTGGAGAAAATACGGTCAAAAAGCTGTCAAAAACAACAAGTTTCCTAGGAGCTATTATAGATGCACGCATCAAGGGTGCAATGTGAAGAAGCAAGTGCAAAGGCTAACAAGAGATGAAGGGGTGGTGGTGACAACATATGAAGGAATGCACACACACTCCATTGATAAGCCAACAGACAACTTTGAACAAATCTTGAGTAGAATGCAGATTTATAGTACTCCTTTTTGA 513 47.17 MFFPCSSGGDGGGRLSAYHHADMSSVSGSDIFGNFHGGDMEVSGVLGMKTEMDAAAATAVEADGGGKKKGEKKVRKPRYAFQTRSQVDILDDGYRWRKYGQKAVKNNKFPRSYYRCTHQGCNVKKQVQRLTRDEGVVVTTYEGMHTHSIDKPTDNFEQILSRMQIYSTPF 170
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 18865943 18868546 - CmPI595203_05g014270.1 Cmu05g1427 416341
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu05g1427 170 Gene3D WRKY domain 74 150 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cmu05g1427 170 SMART WRKY_cls 90 149 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cmu05g1427 170 SUPERFAMILY WRKY DNA-binding domain 82 149 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cmu05g1427 170 FunFam WRKY transcription factor 57 76 150 - -
Cmu05g1427 170 Pfam WRKY DNA -binding domain 91 147 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cmu05g1427 170 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 62 150 IPR044810 GO:0003700(InterPro)
Cmu05g1427 170 ProSiteProfiles WRKY domain profile. 85 150 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu05g1427 Cmu-Chr5:18865943 Cmu07g1525 Cmu-Chr7:30462554 2.30E-46 dispersed
Cmu05g1427 Cmu-Chr5:18865943 Cmu07g0787 Cmu-Chr7:19914567 1.20E-29 transposed
Cmu05g1427 Cmu-Chr5:18865943 Cmu06g0427 Cmu-Chr6:4857912 1.20E-29 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
6196 PF03106 WRKY 3.30E-26 CL0274 Cmu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu05g1427 - - - 0.0