Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu05g1438 ATGGATCCTAAAACTAAAACCTCATCAACAACCAAGCAGCCCCAAGAAGTGGTAGCCAACTTTTTGAAGCCCCCAGAAGAAGAAGAAGAAGAGCATCTAGAAGAAGTAGACGAAGAATCAATCATGGGTGAAAATAAAGCAGGTGAAATAAAAGATTTCCAAATAGCAATTGCAGAGAAAGAAGAGGGCAAAAAACAGTTAGCCCCAAAACGAAGCTCAAACAAAGACCGTCACACGAAAGTGGAAGGCAGAGGGCGAAGAATCCGGATGCCAGCTCTATGTGCCGCTAGGATTTTTCAATTAACGAGGGAATTGGGTCATAAATCCGACGGCGAGACCATCCAGTGGTTGCTGCAGCAGGCGGAGCCGTCTATAATCGCAGCCACGGGGACAGGAACCATTCCAGCTTCTGCTCTAGCGGCGGCGGCAGGTTCTGTTTCGCAACAGGGGGCTTCTCTGTCGGCCGGATTGCACCAAAAATTGGAGGAATTAGGAGGTGGGGGGTCCAGTAGGGCCAATTGGGGGAATTTGGGGAGACCCCATTTGGCCGCCACACCCTCAGGGCTTTGGCCCTCATCTGTCACTGGCTTTGGCTTTCACTCTTCAACTGCTTCTGCTGCTGCTGTTGCTGCTCAATCAGCCACTAATTTACCTAATGAAACTTCAAATTACTTTCATAAACTTGGTTTCCCACCTTTTGATTGTTCCCCCACCAACATGGGTCCTATGAGTTTCACCTCTATTTTAGGTGCAAACACTCAACAATTACCTGGTTTGGAGCTTGGATTGTCCCAAGATGGCCATATTGGGGTTCTAAATCCTCAGGCGCTCAACCAGATTTACCAACAGATGGGACAGCCTAGAGTTCATCAGCAGCATCATCATCAACACCACCACCAGCAGGCTCCTGCTAAGGATGATTCTCAAGATTCAGGCTAG 939 48.46 MDPKTKTSSTTKQPQEVVANFLKPPEEEEEEHLEEVDEESIMGENKAGEIKDFQIAIAEKEEGKKQLAPKRSSNKDRHTKVEGRGRRIRMPALCAARIFQLTRELGHKSDGETIQWLLQQAEPSIIAATGTGTIPASALAAAAGSVSQQGASLSAGLHQKLEELGGGGSSRANWGNLGRPHLAATPSGLWPSSVTGFGFHSSTASAAAVAAQSATNLPNETSNYFHKLGFPPFDCSPTNMGPMSFTSILGANTQQLPGLELGLSQDGHIGVLNPQALNQIYQQMGQPRVHQQHHHQHHHQQAPAKDDSQDSG 312
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 19232415 19233353 + CmPI595203_05g014380.1 Cmu05g1438 416352

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmu05g1438 312 MobiDBLite consensus disorder prediction 1 47 - -
Cmu05g1438 312 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 10 297 IPR005333 GO:0003700(InterPro)|GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0043565(PANTHER)
Cmu05g1438 312 ProSiteProfiles TCP domain profile. 74 128 IPR017887 -
Cmu05g1438 312 MobiDBLite consensus disorder prediction 1 17 - -
Cmu05g1438 312 MobiDBLite consensus disorder prediction 285 312 - -
Cmu05g1438 312 Pfam TCP family transcription factor 73 179 IPR017887 -
Cmu05g1438 312 MobiDBLite consensus disorder prediction 61 83 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu05g1438 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu04g0956 Cmu-Chr4:24015448 Cmu05g1438 Cmu-Chr5:19232415 7.00E-29 dispersed
Cmu05g0870 Cmu-Chr5:7934994 Cmu05g1438 Cmu-Chr5:19232415 1.20E-25 dispersed
Cmu05g1438 Cmu-Chr5:19232415 Cmu06g0192 Cmu-Chr6:2028488 6.60E-55 dispersed
Cmu05g1438 Cmu-Chr5:19232415 Cmu04g1279 Cmu-Chr4:27166591 1.60E-29 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cmu01g0791 . 48 264 TCP Transcription Factor Family AT5G23280 63.4 4.2e-68 255.0
Cmu02g1408 . 37 257 TCP Transcription Factor Family AT5G23280 60.3 1.9e-60 229.6
Cmu06g0017 . 59 341 TCP Transcription Factor Family AT2G45680 54.1 1.5e-66 250.4
Cmu05g2494 . 64 158 TCP Transcription Factor Family AT3G47620 89.7 8.6e-41 165.2
Cmu04g1279 . 40 140 TCP Transcription Factor Family AT3G47620 82.2 1.6e-39 161.0
Cmu11g1349 . 148 230 TCP Transcription Factor Family AT3G47620 90.4 1.3e-36 151.4
Cmu11g1349 . 148 240 TCP Transcription Factor Family AT1G69690 82.8 1.5e-36 150.6
Cmu05g1438 . 49 312 TCP Transcription Factor Family AT3G27010 57.0 3.1e-60 229.2
Cmu02g1408 . 9 255 TCP Transcription Factor Family AT5G08330 56.7 4.6e-64 241.5
Cmu01g0791 . 44 263 TCP Transcription Factor Family AT5G08330 62.2 8.7e-63 237.3
Cmu11g1349 . 147 384 TCP Transcription Factor Family AT1G35560 50.4 1.4e-42 170.6
Cmu07g1621 . 43 168 TCP Transcription Factor Family AT3G02150 62.1 1.3e-38 157.5
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003722 3 3 3 4 3 1 2 1 1 1 1 1 2 1 1 2 1 2 1 1 1 1 1 1 1 1 1 2 2 0 46
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
6197 PF03634 TCP 3.70E-31 No_clan Cmu TF