Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu05g1486 ATGAGCGTAGTAGGTTTTGATATTGGAAATGAGAATTGTGTTATTGCTGTGTCAAGGCAACGTGGTATCGATGTTCTGCTCAATGAGGAATCACAACGAGAGACCCCTGCAGTGATATGCTTTGGGGAAAAGCAGCGGTTTTTGGGTTCTGCGGGTGCTGCTTCTGCAACAATGAACCCAAGATCCACTATATCTCAGGTAAAGAGATTGATTGGACGTAACTTCAGTGAGCCAGATGTTCAAAAGGATCTCAATATGCTTCCTTTCAAAACATCTGAAGCCCTTGATGGCAGCATTTTGGTTCATGTGAAATACTTGGGGGAGACTCATACATTTACTCCAGTTCAGATCATGGCAATGCTCCTTGCACATTTGAGAGATGTAGCTGAGAAAAATTTGGGAGCACCATTTTCAGATTGTGTTATTGGTATTCCATCGTATTTTACAGATTTGCAGAGACGTTTATATTGGAATGCTGCTGCTATTGCTGGTTTAAAGCCTTTGAGACTCATGCATGACTGTACTGCAACAGCACTTAGCTATGGAATTTATAAAACAGATTTCTCAAGGACAGGTCCAATATATGTTGCATTTGTTGATATTGGTCACTGTGATACCCAGGTCTCCTTTGTATCATTTGAGCCTGGACATATGAGGATTATGTCACATACCTATGATAGAGATTTAGGAGGTAGAGACTTTGATGAGGTTCTATTCAGCCACTTTGTTGCAGAATTTAAGAAGAATTATGATATAGATGTAAATTCAAATGTCAAGGCTTCTATCAGATTGCGGGCAGCTTGTGAGAAGCTGAAGAAAGTTTTGAGTGCAAATTTGGAGGCACCTCTTAATATTGAATGCCTGATGGACGAGAAAGACGTTAAGGGGTTTATCAAAAGAGAAGAATTTGAAAAGCTTGCCTCTGGGTTACTGGAGAGGATTAGTATTCCCTGTACCAGAGCCTTAGCTGATGCAGGATTAACTGTAGAAAAAATCCATTCTGTTGAGCTTGTTGGATCAGGGTCAAGGATCCCTGCGATAACAAGGCTATTGAGTTCCGTATTTAAAAAAGAACCCAGTCGTAAACTTAATGCTAGTGAATGTGTAGCTCGTGGTTGTGCTCTACAGTGTGCCATGCTTAGCCCAGTTTTCCGGGTCAGAGAATATGAGGTTCAGGATTCATCCCCCTTCTCCATTGGCTTCTCATCAGATGCAGGCCCAATTAGCTTAGGCTTAAATAATGTACTATTTCCCAAAGGCCAGCACATTCCAAGTACTAAAGTTCTATCATTCCAGCGCAACAGTTTATTCCACTTAGAAGCAGTTTATACTAATCTGGATGAACTACCTCCTGGCATGTCTTCAAAAATTGGTTGCTTTACAATTGGTCCTGTCCAAGGTTCAAACAACTCGAATTCAAGGGTTAAAGTCAGAGTTCAATTAAATATGAATGGCATTGTTACTGTTGAATCAGCTACACTTGTAGAGGATAATGTAGATGAACAAACGCCAAGGAGAGATGCTGCTCACTTGAACACAGAAAAAATGGAGACCGAGTTTGTTGATTCTTCCCATCCTGAGTCTGATGTTTCAAGAAAAGCTAGGAGCACAAGGAGGATTGATATACCAGTTAGTGAACATATATATGGTGGAATGACCAAGGCTGAGCTCTCAGAAGCCCAAGAAAGAGAGCTACAACTTGCCCAACAGGATAAAAATATGGAACAGGCCAAAAATAAGAAGAATGCTTTGGAGTCATATGTCTATGAGACGAGGAATAAGCTTTTCAACACATATCGGAGTTTCGCTAGTGATCAAGAGCGAGAAGGCATCTCCTCAAGCCTCCAGCAAACAGAGGAGTGGCTATATGAGGATGGAGACGATGAGACAGAGAGTGCTTATTCTTCCAAGTTAGATGACCTTAAGAAGTTGGTGGATCCTATAATTAACCGATACGAAGATGAAGAAGCTAGAGCACAAGCTAAAGTGCATTTGTTAAAGCGTATTTCTGATTATAGGAACTCTGGGGATTCACTTTCACCTCAAGCTCGAGCGTTGATCCTTGAGGAGTGCGACAGAGCAGAGCAGTGGCTAACAGAGAAAAACGAACAACAAGAGTTGTTACCAAAAAACACTGACCCTTTACTATGGTCATGCGAGATCAGAACTCGGGAGGAGGATTTTGACAAGGCATGCCAGAGGATCTTGGGACATGTGTCTTCCCATACACATTCAGGAGATTCCAAGGAACCAAACCATCACAATTCTTCTGATAACCACCATTCTTAA 2289 41.5 MSVVGFDIGNENCVIAVSRQRGIDVLLNEESQRETPAVICFGEKQRFLGSAGAASATMNPRSTISQVKRLIGRNFSEPDVQKDLNMLPFKTSEALDGSILVHVKYLGETHTFTPVQIMAMLLAHLRDVAEKNLGAPFSDCVIGIPSYFTDLQRRLYWNAAAIAGLKPLRLMHDCTATALSYGIYKTDFSRTGPIYVAFVDIGHCDTQVSFVSFEPGHMRIMSHTYDRDLGGRDFDEVLFSHFVAEFKKNYDIDVNSNVKASIRLRAACEKLKKVLSANLEAPLNIECLMDEKDVKGFIKREEFEKLASGLLERISIPCTRALADAGLTVEKIHSVELVGSGSRIPAITRLLSSVFKKEPSRKLNASECVARGCALQCAMLSPVFRVREYEVQDSSPFSIGFSSDAGPISLGLNNVLFPKGQHIPSTKVLSFQRNSLFHLEAVYTNLDELPPGMSSKIGCFTIGPVQGSNNSNSRVKVRVQLNMNGIVTVESATLVEDNVDEQTPRRDAAHLNTEKMETEFVDSSHPESDVSRKARSTRRIDIPVSEHIYGGMTKAELSEAQERELQLAQQDKNMEQAKNKKNALESYVYETRNKLFNTYRSFASDQEREGISSSLQQTEEWLYEDGDDETESAYSSKLDDLKKLVDPIINRYEDEEARAQAKVHLLKRISDYRNSGDSLSPQARALILEECDRAEQWLTEKNEQQELLPKNTDPLLWSCEIRTREEDFDKACQRILGHVSSHTHSGDSKEPNHHNSSDNHHS 762
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 22249912 22255167 + CmPI595203_05g014860.1 Cmu05g1486 416400

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmu05g1486 762 CDD HSPA4_like_NDB 2 381 - -
Cmu05g1486 762 PANTHER HSC70CB, ISOFORM G-RELATED 1 740 IPR050451 GO:0005634(PANTHER)|GO:0005829(PANTHER)|GO:0006457(PANTHER)
Cmu05g1486 762 Coils Coil 649 669 - -
Cmu05g1486 762 PRINTS 70kDa heat shock protein signature 140 160 - -
Cmu05g1486 762 PRINTS 70kDa heat shock protein signature 363 383 - -
Cmu05g1486 762 PRINTS 70kDa heat shock protein signature 388 407 - -
Cmu05g1486 762 PRINTS 70kDa heat shock protein signature 2 15 - -
Cmu05g1486 762 PRINTS 70kDa heat shock protein signature 30 42 - -
Cmu05g1486 762 PRINTS 70kDa heat shock protein signature 472 488 - -
Cmu05g1486 762 PRINTS 70kDa heat shock protein signature 332 348 - -
Cmu05g1486 762 MobiDBLite consensus disorder prediction 518 537 - -
Cmu05g1486 762 MobiDBLite consensus disorder prediction 740 762 - -
Cmu05g1486 762 MobiDBLite consensus disorder prediction 743 762 - -
Cmu05g1486 762 FunFam Heat shock 70 kDa protein 4 98 193 - -
Cmu05g1486 762 FunFam Heat shock 70 kDa protein 4 38 113 - -
Cmu05g1486 762 Gene3D Actin; Chain A, domain 4 230 313 - -
Cmu05g1486 762 Coils Coil 558 587 - -
Cmu05g1486 762 FunFam Heat shock 70 kDa protein 4 1 80 - -
Cmu05g1486 762 FunFam Heat shock 70 kDa protein 4 230 313 - -
Cmu05g1486 762 Gene3D - 38 113 - -
Cmu05g1486 762 Gene3D - 5 374 - -
Cmu05g1486 762 SUPERFAMILY Actin-like ATPase domain 1 185 IPR043129 -
Cmu05g1486 762 SUPERFAMILY Heat shock protein 70kD (HSP70), peptide-binding domain 384 585 IPR029047 -
Cmu05g1486 762 Gene3D Substrate Binding Domain Of DNAk; Chain A, domain 1 387 550 IPR029047 -
Cmu05g1486 762 Pfam Hsp70 protein 3 652 IPR013126 GO:0005524(InterPro)|GO:0140662(InterPro)
Cmu05g1486 762 SUPERFAMILY Actin-like ATPase domain 192 381 IPR043129 -
Cmu05g1486 762 Gene3D - 186 360 - -
Cmu05g1486 762 FunFam Heat shock 70 kDa protein 4 552 662 - -
Cmu05g1486 762 SUPERFAMILY Heat shock protein 70kD (HSP70), C-terminal subdomain 554 652 IPR029048 -
Cmu05g1486 762 Gene3D - 552 664 IPR029048 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu05g1486 K09489 - - csv:101219607 1373.22
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu05g1486 Cmu-Chr5:22249912 Cmu09g0207 Cmu-Chr9:2155377 4.30E-217 dispersed
Cmu05g1486 Cmu-Chr5:22249912 Cmu09g1914 Cmu-Chr9:35190628 4.50E-73 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g507 Blo03g00559 . Bda07g00360 . . . . . . . Cma01g01133 Cma09g00950 . Car09g00863 . Cpe06g00765 Cpe02g00768 . . . . . . . . . . . . . . . . Cone14ag1142 Cone15ag1160 Lsi04g01203 . . . . . . . Bpe11g00547 . . Bma14g00339 . Cmo01g01184 Cmo09g00948 . . . Car16g00544 . . . . . . . . . Cla05g01487 . Cec05g1613 . Clacu05g1583 Cmu05g1486 . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004049 1 5 1 1 1 1 2 3 1 1 1 1 2 1 1 2 1 2 2 2 1 1 1 1 1 1 1 3 2 0 44