Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu05g1516 ACTCTCCCTCACGCCGCCGTTGTGCCGCTGCCGCCGGATTTCTCTCTCCGCCGCCACCGCTGCCTTTTTGCAATGATTCAGTCAGGGATTCCAACCCAAGTTTTGGCAGGAATTGATTGTGTACGTTGTGCTCATTCATGTTCATCCATGTCTCACCGAAACCATGACGATGAAGGTGACGTTGAGCTTCCTGTCAGCAAGGAAGATGATGTGGTTGATGAGGACATGGAAGCCCTTCGGAGAGCCTATAAGCATGTTGGAGTTAATCCTGAGGATTACATTAATCCTAGGTTGTCATCACCTGTTGCCGGAGATGCTAATCCTAGTTCTGATTCTGATGATGTTGATGATTTTGAACTTCTTCGAAATATTCAGAATCGGTTCTCATGTGTGGCTGATGAGCAGCCGTTGAGTACTCTCCCACCAATGTCCCTAGACGAGGAGGAAGATGAATTTGAGATGCTTCGTTCAATTCAGCGGCGCTTTGCAGCGTACGAAAGTGATACTTTGAGCAATAAACCCAATCAGTTGTGTGACCATGTTGGGTCTTTGAAGATGGATTTTGATGACACAGCTGTTGAGAGTCAGACAGCCTCAAAAAGGCCATCCATGCTAGCCTTTGAAAAGGGAAGCTTGCCAAAAGCTGCATTGGCATTTATTGATGCCATCAAGAAAAATAGGTCCCAGCAGAAGTTTATTCGTAGTAAGATGATTCATCTTGAAGCTAGAATTGAGGAGAACAAAAAGCTCAGAAAACGTTTCAAAATTCTCAAAGATTTCCAGGGTTCATGTAAACGGAGAACAACCTGTGCACTGTCTCAAATGATAGATCCTCGAGTCCAGTTGATTTCAGCTGCAAAACCACAAGCAAAGGATTCATCAAAGAAGGACAAACGATTATCTGCAATGCATTATGGCCCAGCTGAGAATTCTCATGTTGCATGCTACAGAATGGCATTAATGAAGTTTCCTCGTGTAGATCGAAAAAAATGGTCCGTTGTAGAAAGGGAGAATCTAGGGAAGGGAATAAGACAACAATTTCAGGAGATGGTGCTTCAGATTTCAGTGGATCAAATTAGTGGGCTACAAGGATTCTCTGCAGATTCAGATGATTTGGATAACATTCTTGCATCAATAAAAGACCTTGACATCACTCCTGAAAAGATTAGGGAATTTCTGCCAAAAGTTAATTGGGACAAATTGGCTTCCATGTATCTTCGGGGTCGCTCAGGGGCAGAATGTGAAGCGAGGTGGTTGAATTTCGAAGACCCCCTAATTAATCGGGATCCATGGACTACAAGTGAGGATAAGAATCTTTTGTTTACTATCCAACAGAAGGGGTTGAATAACTGGATTGAGATAGCAGTTTCGTCGGGTACAAATAGAACTCCTTTTCAGTGCTTGTCTCGGTATCAAAGGAGTTTAAACGCTTCCATATTAAAGAGGGAGTGGACCAAAGACGAGGATGATAAACTTCGAGCTGCTGTTGCTACATTTGGCCTGGGAGATTGGCAGGCAGTAGCTTCTACTTTGGAAGGACGAACTGGCCCACAGTGCTCTAATAGGTGGAAAAAATCCCTTGACCCAGCTAGGACAAAAAGAGGTCATTTCACTCCAGATGAAGACAGTCGCTTGAAAATTGCTGTACTGCTCTTTGGGCCTAAAAATTGGAACAAGAAAGCAGAATTTTTACCTGGTCGAAATCAAGTTCAATGCAGAGAAAGATGGTTTAATTGTTTAGATCCTTCCTTGAGAAGATGCGAATGGACAGAAGAGGAGGATTTAAGGCTGGAGATAGCAATTCAGGAACATGGATATAGCTGGACTAAGGTAGCTGCATGTGTGCCGTCACGTACAGATAATGATTGTCGGAGGAGATGGAAGAAGTTATTTCCCAATGAAGTTCCGTTACTCCAGGAAGCTAGAAAGATTCAGAAGGCTGCTCTTATTAGCAACTTTGTTGATAGGGAATCAGAGCGTCCTGCTCTTGGTCCTACTGACTTTCGACCCAGGCCAAACACAGATTTATTGTGTAATAGTGTTGATCCAAGACCTGCCCCAAAAAGAAATGTGAAGACGAGAAAGATGCCAGTGTCAAGGAATGAAAAGAGTGCTACTGGTGATGCTCCAAAGAAGAGGAAATCAAATTGCCAGAGGAATCAGGCTGATGTAACTGCTCAGGCGGGTATTGCAAATAATACCTCTTCTGTCCCAGAGGAGGTTAAATCTCTAAAGCCTCAAAGAAAACAAAATAGACATGGAGCTTATACCGCAGAAGGGGTTCCGGAGCTATGTCCTAACAGTGAGTGGTGTGCTAAACAGAGTTTGGACACTCAGAGCCTTGGGGTGCAGCTGTCGCTGTTGGAATCTGAGGGGACCAACGGCGACTGCATCGAGACTGTTGATGAGAATGGTATGGAGGTATTTGAGAACAAAGTTGCAGAGAAACTTTCTGAAAGAGATGTATGTTTTCCAGAACCAGAAGCAATTCAAAACTCTACCGGATCTTCTGGAGTCTCGGTATTGTCAGAAATGACTAATGACATGGATGAATACAATCCGTCTATCCTTCCAGATACAACATTGTTGGCTAGTACTACTGTGGATGATCTCAAAGAATTGAAGAGGAAGAGTGTTGCAGACAGAGATCTGGATGACTGTAACAGTTTCTCGTTACCGTGCAGTGACTTGGAACTCAGGACAATCGACAAGGAAGGTGTGGACAGTTATTCCATGGATGAATTTACAGATAAAAGCCATGGGGTTTGCAAGCCCCCCCATACCAGAAGGAAGAAAAACAGCAAAACATCAAGTAAGAGCCAGGATCATTCCTTTGTTTCTTGTCAACAAGTGGAGTTGGAGAGGTTGGGGACAAATGAGCCTCGTCATCATAATCAATCAAAGAAGAGAAAACATAACAGTACAAATACGAATCTGGAGGCAGTTGAGGAGGTTGATGACTGCACACTCGTGGGCTTTTTGCAAAAAAGATTGAAGAGGACGACGACAACAAATGACAAGAAAGTTGATTGCAGTTCAAGTACTCCCATAGAAGTTGATACTGATGACAACGATCCTACCCTTGCCTCGTTTCTTAATAAATTAAAGAGAAAAAAGCATCAGCCGAGTAGTGGTGGTGAGTTAAACTAG 3150 43.49 TLPHAAVVPLPPDFSLRRHRCLFAMIQSGIPTQVLAGIDCVRCAHSCSSMSHRNHDDEGDVELPVSKEDDVVDEDMEALRRAYKHVGVNPEDYINPRLSSPVAGDANPSSDSDDVDDFELLRNIQNRFSCVADEQPLSTLPPMSLDEEEDEFEMLRSIQRRFAAYESDTLSNKPNQLCDHVGSLKMDFDDTAVESQTASKRPSMLAFEKGSLPKAALAFIDAIKKNRSQQKFIRSKMIHLEARIEENKKLRKRFKILKDFQGSCKRRTTCALSQMIDPRVQLISAAKPQAKDSSKKDKRLSAMHYGPAENSHVACYRMALMKFPRVDRKKWSVVERENLGKGIRQQFQEMVLQISVDQISGLQGFSADSDDLDNILASIKDLDITPEKIREFLPKVNWDKLASMYLRGRSGAECEARWLNFEDPLINRDPWTTSEDKNLLFTIQQKGLNNWIEIAVSSGTNRTPFQCLSRYQRSLNASILKREWTKDEDDKLRAAVATFGLGDWQAVASTLEGRTGPQCSNRWKKSLDPARTKRGHFTPDEDSRLKIAVLLFGPKNWNKKAEFLPGRNQVQCRERWFNCLDPSLRRCEWTEEEDLRLEIAIQEHGYSWTKVAACVPSRTDNDCRRRWKKLFPNEVPLLQEARKIQKAALISNFVDRESERPALGPTDFRPRPNTDLLCNSVDPRPAPKRNVKTRKMPVSRNEKSATGDAPKKRKSNCQRNQADVTAQAGIANNTSSVPEEVKSLKPQRKQNRHGAYTAEGVPELCPNSEWCAKQSLDTQSLGVQLSLLESEGTNGDCIETVDENGMEVFENKVAEKLSERDVCFPEPEAIQNSTGSSGVSVLSEMTNDMDEYNPSILPDTTLLASTTVDDLKELKRKSVADRDLDDCNSFSLPCSDLELRTIDKEGVDSYSMDEFTDKSHGVCKPPHTRRKKNSKTSSKSQDHSFVSCQQVELERLGTNEPRHHNQSKKRKHNSTNTNLEAVEEVDDCTLVGFLQKRLKRTTTTNDKKVDCSSSTPIEVDTDDNDPTLASFLNKLKRKKHQPSSGGELN 1049
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 23151748 23169339 + CmPI595203_05g015160.1 Cmu05g1516 416430
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu05g1516 1049 ProSiteProfiles Myb-like domain profile. 581 631 IPR001005 -
Cmu05g1516 1049 SUPERFAMILY Homeodomain-like 420 476 IPR009057 -
Cmu05g1516 1049 PANTHER SNRNA-ACTIVATING PROTEIN COMPLEX SUBUNIT 4 53 1040 IPR051575 GO:0000978(PANTHER)|GO:0001006(PANTHER)|GO:0019185(PANTHER)|GO:0042795(PANTHER)|GO:0042796(PANTHER)
Cmu05g1516 1049 SMART sant 533 582 IPR001005 -
Cmu05g1516 1049 SMART sant 480 529 IPR001005 -
Cmu05g1516 1049 SMART sant 327 424 IPR001005 -
Cmu05g1516 1049 SMART sant 427 477 IPR001005 -
Cmu05g1516 1049 SMART sant 585 633 IPR001005 -
Cmu05g1516 1049 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 533 580 IPR017930 -
Cmu05g1516 1049 MobiDBLite consensus disorder prediction 939 954 - -
Cmu05g1516 1049 Gene3D - 480 530 - -
Cmu05g1516 1049 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 581 635 IPR017930 -
Cmu05g1516 1049 MobiDBLite consensus disorder prediction 94 113 - -
Cmu05g1516 1049 ProSiteProfiles Myb-like domain profile. 476 527 IPR001005 -
Cmu05g1516 1049 ProSiteProfiles SANT domain profile. 479 528 IPR017884 -
Cmu05g1516 1049 ProSiteProfiles Myb-like domain profile. 529 580 IPR001005 -
Cmu05g1516 1049 Gene3D - 425 476 - -
Cmu05g1516 1049 CDD SANT 537 578 IPR001005 -
Cmu05g1516 1049 Gene3D - 531 585 - -
Cmu05g1516 1049 Gene3D - 588 634 - -
Cmu05g1516 1049 MobiDBLite consensus disorder prediction 1002 1026 - -
Cmu05g1516 1049 MobiDBLite consensus disorder prediction 719 741 - -
Cmu05g1516 1049 SUPERFAMILY Homeodomain-like 460 529 IPR009057 -
Cmu05g1516 1049 ProSiteProfiles Myb-like domain profile. 423 475 IPR001005 -
Cmu05g1516 1049 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 476 531 IPR017930 -
Cmu05g1516 1049 MobiDBLite consensus disorder prediction 913 978 - -
Cmu05g1516 1049 MobiDBLite consensus disorder prediction 659 753 - -
Cmu05g1516 1049 Pfam Myb-like DNA-binding domain 586 630 IPR001005 -
Cmu05g1516 1049 Pfam Myb-like DNA-binding domain 481 525 IPR001005 -
Cmu05g1516 1049 Pfam Myb-like DNA-binding domain 428 473 IPR001005 -
Cmu05g1516 1049 Pfam Myb-like DNA-binding domain 534 580 IPR001005 -
Cmu05g1516 1049 CDD SANT 483 527 IPR001005 -
Cmu05g1516 1049 SUPERFAMILY Homeodomain-like 531 627 IPR009057 -
Cmu05g1516 1049 MobiDBLite consensus disorder prediction 695 718 - -
Cmu05g1516 1049 MobiDBLite consensus disorder prediction 1007 1021 - -
Cmu05g1516 1049 CDD SANT 588 631 IPR001005 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu05g1516 Cmu-Chr5:23151748 Cmu10g1549 Cmu-Chr10:11115417 0.00E+00 dispersed
Cmu05g1516 Cmu-Chr5:23151748 Cmu06g1750 Cmu-Chr6:28546631 9.20E-16 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
6199 PF13921 Myb_DNA-bind_6 2.60E-11 CL0123 Cmu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu05g1516 K09422 - csv:101216287 1655.96